 Adam Husar
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384ec3c476
Flushing buffers when ctrl-c is caught during simulation
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4 年之前 |
|
Adam Husar
|
997a8e7943
Added periodic memory limit checking
|
4 年之前 |
|
Adam Husar
|
998346fb74
Fixed issue when removed rxn classes were still referenced
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4 年之前 |
|
Adam Husar
|
0000bf42ba
Fixed case when multiple regisons release onto the same wall using
|
4 年之前 |
|
Adam Husar
|
0734be0573
Added reporting of simulation time without iteration 0
|
4 年之前 |
|
Adam Husar
|
32232fc90a
Added forgotten constants
|
4 年之前 |
|
Adam Husar
|
bbc85a8a81
Tentative generation of model config customization
|
4 年之前 |
|
Adam Husar
|
b159a9dce1
Moved for too high unimol rxn rate from
|
4 年之前 |
|
Adam Husar
|
dc805834ac
Removed unused debugging code
|
4 年之前 |
|
Adam Husar
|
fc7dbab7a4
Disabled safe diffusion step because it makes perfomance worse
|
4 年之前 |
|
Adam Husar
|
0878ad031e
Optimization of graph creation by reserving memory for vertices
|
4 年之前 |
|
Adam Husar
|
4a4ffa37be
Optimized flag initialization in Cplx::initialize
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4 年之前 |
|
Adam Husar
|
ef02bb4dba
Modified MCell4 dumps to not print geometry by default
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4 年之前 |
|
Adam Husar
|
3edfd32da8
Exporting release pattern with same name only once to data model
|
4 年之前 |
|
Adam Husar
|
791176e157
Optimized Component::to_str
|
4 年之前 |
|
Adam Husar
|
f352be5ea1
Tentative change of Species storage to pointers
|
4 年之前 |
|
Adam Husar
|
b69612cda2
Optimized calls to Cplx::to_str
|
4 年之前 |
|
Adam Husar
|
0aa359744a
Optimized rxn class creation by better caching of applicable rxn
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4 年之前 |
|
Adam Husar
|
86735f2619
Disabled debug configs
|
4 年之前 |
|
Adam Husar
|
6893da8710
Not scheduling non-diffusible molecules for diffusion
|
4 年之前 |
|
Adam Husar
|
5e447a1f70
Unified calls to run_n_iterations and end_simulation between MDL and
|
4 年之前 |
|
Adam Husar
|
8c5af5da86
Handling case when viz output periodicity is 0
|
4 年之前 |
|
Adam Husar
|
ebc884b31e
Added barrier event ot serve as a diffusion barrier for
|
4 年之前 |
|
Adam Husar
|
bdc17b9dbc
Fixed computation of max time when molecule matures in MCell3
|
4 年之前 |
|
Adam Husar
|
803107f9ff
Checking that a moleculek is not schduled for this iteration, fixed
|
4 年之前 |
|
Adam Husar
|
ea445a5da8
Enabled safe diffusion step and fixed distance3_squared
|
4 年之前 |
|
Adam Husar
|
e126dd0187
Unified BNG naming with API by renaming MolType to ElemMolType,
|
4 年之前 |
|
Adam Husar
|
22172f9565
Renamed API ComponentInstance to Component, ElementaryMoleculeInstance
|
4 年之前 |
|
Adam Husar
|
5bf02eaa21
Removed custom __repr__ implementation for better error messages.
|
4 年之前 |
|
Adam Husar
|
42271a90b9
Added Count.get_current_value and Observables.find_count
|
4 年之前 |
