 Adam Husar
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2b57ec39ee
Added support for synchronous checkpoint scheduling, asunchronous
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3 年之前 |
|
Adam Husar
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50adb6ecfa
Changed EndIterationCallEvent to a template
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3 年之前 |
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Adam Husar
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95842d7788
Renamed PeriodicCallEvent to EndIterationCallEvent
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3 年之前 |
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Adam Husar
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b44f46e1ed
run_n_iterations returns number of executed iterations, preparation for
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3 年之前 |
|
Adam Husar
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50bdd3df2c
Removed forgotten debug config
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3 年之前 |
|
Adam Husar
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65670c843a
Fixed addition of checkpointed molecules into partition
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3 年之前 |
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Adam Husar
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e0a25f6225
Export of molecule flags into checkpoints
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3 年之前 |
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Adam Husar
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9330c60e14
Renumbered flags
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3 年之前 |
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Adam Husar
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2b113c8d6a
Cleanup of unused flags ACT_REACT, IN_SCHEDULE and MATURE_MOLECULE
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3 年之前 |
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Adam Husar
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455cf5a6a2
Renamed flag ACT_CLAMPED to MOLECULE_FLAG_ACT_CLAMPED
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3 年之前 |
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Adam Husar
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9f7d566eeb
Removed usage of flag IN_SURFACE in MCell4
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3 年之前 |
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Adam Husar
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682677d6ee
Removed usage of flag IN_VOLUME in MCell4
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3 年之前 |
|
Adam Husar
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00635e89cb
Removed usage of flag ACT_DIFFUSE in MCell4
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3 年之前 |
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Adam Husar
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f7532547a4
Initial addition of checkpointed molecules to partition, ids and flags
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3 年之前 |
|
Adam Husar
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0b004dc169
Putting checkpointed molcules both vol and surf into the same array to
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3 年之前 |
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Adam Husar
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0697597565
Using initial rng state when restoring a checkpoint
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3 年之前 |
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Adam Husar
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238c1f5480
Using initial_iteration and initial_time from checkpoint
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3 年之前 |
|
Adam Husar
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28d83d7d31
Fixed total iteration count in checkpoint
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3 年之前 |
|
Adam Husar
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50c35428b6
Renamed Config.total_iterations_hint to Config.total_iterations
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3 年之前 |
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Adam Husar
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eb56387ef7
Printing inherited items first, not printing default unimol rx time
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3 年之前 |
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Adam Husar
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d2ad431869
Using maximum precision for export of floating point to python
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3 年之前 |
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Adam Husar
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159e1d8f28
Optimization of counting for cases when there are many species
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3 年之前 |
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Adam Husar
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cf111aa923
Added periodic cleanup of reactant classes
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3 年之前 |
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Adam Husar
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b53ae67e38
Fixed memory leak in RxnContainer::find_or_add_reactant_class
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3 年之前 |
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Adam Husar
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9be68d2050
When counting, ignoring species without instances
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3 年之前 |
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Adam Husar
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725dbd2d3b
Changed ReactantClassIdSet to use uint_set instead of std::set
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3 年之前 |
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Adam Husar
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47c6b7b65a
Inlining of MolOrRxnCountEvent::get_or_compute_count_species_info
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3 年之前 |
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Adam Husar
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6edaf15b7d
Using small_vector for arrays in counts
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3 年之前 |
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Adam Husar
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87daf7e51d
Revert "Tentative merging of count items into a single event"
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3 年之前 |
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Adam Husar
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d84e7ba049
Tentative merging of count items into a single event
|
3 年之前 |
