 Adam Husar
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84928b439a
Modifications of bngl lib to compile with MSVC
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3 年之前 |
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Adam Husar
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173132f716
Nauty fixes for MSCV compilation
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3 年之前 |
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Adam Husar
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7222f195cd
Updated of windows build files, added windows test directory
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3 年之前 |
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Adam Husar
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7f881c22e5
Fixed for build on Windows after merge with checkpoints branch
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3 年之前 |
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Adam Husar
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d7c4a920ab
Merge remote-tracking branch 'origin/mcell4_checkpointing2' into
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3 年之前 |
 Adam
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585362e41c
Initial set of changed for Windows build
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3 年之前 |
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Adam Husar
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b7471ec654
Added support for custom time and space step for complexes that have
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3 年之前 |
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Adam Husar
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5b69d952d2
Preparation for support of custom time/space step for complex molecules.
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3 年之前 |
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Adam Husar
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654218322f
Fixed handling of any bond in component::to_bngl_str()
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3 年之前 |
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Adam Husar
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b369f71714
Fixed export of component states into checkpoint
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3 年之前 |
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Adam Husar
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fd9779a1f9
Limiting length of checkpointed species object name
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3 年之前 |
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Adam Husar
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eb28563c71
Support for Species defined just using its BNGL string.
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3 年之前 |
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Adam Husar
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e0f5daee41
Not exporting orientation nor compartment into BNGL complex name for
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3 年之前 |
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Adam Husar
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5a41bccbd9
Allowing case when count's complex has compartment and regision is set
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3 年之前 |
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Adam Husar
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91689625b6
Fixed species and reaction classes export when checkpointing a model
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3 年之前 |
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Adam Husar
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45ae336242
Adding species to model that are used by checkpointed molecules but not
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3 年之前 |
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Adam Husar
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f096510f8b
Fixed issue with iteration time floating point imprecision
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3 年之前 |
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Adam Husar
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a0f7456d72
Added CountTerm.initial_reactions_count to be able to checkpoint number
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3 年之前 |
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Adam Husar
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a7c4e6301b
Not exporting ALL_*MOLECULES and also importing subsystem into geometry
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3 年之前 |
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Adam Husar
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6552792e10
Fixed export of unnamed Count objects
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3 年之前 |
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Adam Husar
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9f99f8920f
Reorganized checkpoint signal handling because the original
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3 年之前 |
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Adam Husar
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06b0b151b1
Fixed handling of skip_events_up_to_time for a checkpointed iteration
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3 年之前 |
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Adam Husar
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6772be3051
Added export of schedule checkpoints, using FINISHED as marker telling
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3 年之前 |
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Adam Husar
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962857cbb1
Added generation of python code that detects previous checkpoint and
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3 年之前 |
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Adam Husar
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1d7181001f
Extended data model to python generator to generate testing for
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3 年之前 |
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Adam Husar
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a233e9e8e0
Added submodule run_utils with methods get_last_checkpoint_dir and
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3 年之前 |
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Adam Husar
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9a113eddd4
Not running viz and rxn output if simulation was terminated with a
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3 年之前 |
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Adam Husar
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4c63d43057
Added handling of checkpointing signals
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3 年之前 |
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Adam Husar
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f4beba1019
Added option Config.append_to_count_output_data to append to reac_data
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3 年之前 |
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Adam Husar
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384b98b707
Support for asynchronous calls to Model.schedule_checkpoint e.g. from a
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3 年之前 |
