 Boris Kaminsky
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c6eafe8878
Merged with trunk
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16 年之前 |
 Jed Wing
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d9aa82fec3
I broke the build when I made the new outcome_products default. Thanks to
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16 年之前 |
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Jed Wing
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b620007902
Changed new outcome_products to default.
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16 年之前 |
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Jed Wing
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c9bd0dc0ea
Fixed bug in adaptive multistep that was resulting in diffusion anomalies.
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16 年之前 |
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Jed Wing
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1f99511166
Merged in change from Boris.
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16 年之前 |
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Jed Wing
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edfa497d11
Added surface reactions tests, and an additional version of the volume
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16 年之前 |
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Jed Wing
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86787274ed
Regression test for recent bugfix.
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16 年之前 |
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Jed Wing
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081bddede4
Fixed an error introduced in find_corresponding_region.
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16 年之前 |
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Boris Kaminsky
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d1bb923b45
Cleaned up the unused code from the function 'run_timestep()' related to the garbage collection.
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16 年之前 |
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Boris Kaminsky
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a73446b387
Cleaned up the unused code from the function 'run_timestep()' related to the garbage collection.
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16 年之前 |
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Jed Wing
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07155613dc
Added in quantitative test for volume reaction rates and equilibrium modified from integration tests I used when merging the macromolecules code with Boris' trimolecular reactions code.
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16 年之前 |
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Jed Wing
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e804b2a2a4
Merged across fix for conflicted molecule flag in the 3.1 branch.
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16 年之前 |
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Jed Wing
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3412037f71
Quick update to only update certain counts when we are in a counting region.
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16 年之前 |
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Jed Wing
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338d466995
Fix for a bug reported by Boris. One of the new molecule flags was in conflict with the ACT_CLAMPED flag.
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16 年之前 |
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Jed Wing
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af94e21468
Merged Markus' updated author list for the QRG.
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16 年之前 |
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Jed Wing
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d243a9c756
Fixed a bug related to unimolecular reaction time rescheduling in surface macromolecules.
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16 年之前 |
 dittrich
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67c670d8ef
Updated list of authors per Joel's request.
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16 年之前 |
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Jed Wing
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a05f5f99f6
Merged across removal of log statement.
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16 年之前 |
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Jed Wing
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feba0695d4
Removed spurious log statement added by previous commit.
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16 年之前 |
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Jed Wing
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317eea6229
Merging across fixes to bugs found while adding in the last test in the macromolecules test suite.
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16 年之前 |
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Jed Wing
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9077405ae9
Fixed bug related to surface macromol effector init by density, added in
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16 年之前 |
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Jed Wing
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87e68242b6
Fix for surface macromolecule counting bug; counting surface molecules on a
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16 年之前 |
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Jed Wing
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3fa5579937
Merged across fixes from the trunk, and the checkpoint_outfile feature, which
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16 年之前 |
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Jed Wing
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e43921a1fd
Fix for broken vol-vol reactions in new outcome_products code, including a
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16 年之前 |
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Jed Wing
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aa49023554
Bugfix for the checkpoint_outfile command-line argument feature. The
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16 年之前 |
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Jed Wing
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7c90b2e7e5
Added in test for surface list release placement for macromolecules.
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16 年之前 |
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Jed Wing
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af7bd8f0d2
Added command-line argument to specify checkpoint output file on command-line. Used for automatic checkpointing of jobs in a BQS context.
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16 年之前 |
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Jed Wing
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c508549561
Merged over bugfixes and current incarnation of the testsuite from the trunk.
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16 年之前 |
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Jed Wing
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7aeefe77f8
Added a regression test for the bug Boris reported yesterday.
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16 年之前 |
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Jed Wing
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c68c8aa8c7
Working on cleaning up and fixing bugs in outcome_products. The new outcome
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16 年之前 |
