rticles/inst/rmarkdown/templates/elsevier_article/resources/template.tex

\documentclass[$layout$]{elsarticle} %review=doublespace preprint=single 5p=2 column
%%% Begin My package additions %%%%%%%%%%%%%%%%%%%
\usepackage[hyphens]{url}

$if(journal)$
  \journal{$journal$} % Sets Journal name
$endif$


\usepackage{lineno} % add
$if(linenumbers)$
  \linenumbers % turns line numbering on
$endif$
\providecommand{\tightlist}{%
  \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}

\bibliographystyle{elsarticle-harv}
\biboptions{sort&compress} % For natbib
\usepackage{graphicx}
\usepackage{booktabs} % book-quality tables
%%%%%%%%%%%%%%%% end my additions to header

\usepackage[T1]{fontenc}
\usepackage{lmodern}
\usepackage{amssymb,amsmath}
\usepackage{ifxetex,ifluatex}
\usepackage{fixltx2e} % provides \textsubscript
% use upquote if available, for straight quotes in verbatim environments
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
  \usepackage[utf8]{inputenc}
$if(euro)$
  \usepackage{eurosym}
$endif$
\else % if luatex or xelatex
  \usepackage{fontspec}
  \ifxetex
    \usepackage{xltxtra,xunicode}
  \fi
  \defaultfontfeatures{Mapping=tex-text,Scale=MatchLowercase}
  \newcommand{\euro}{€}
$if(mainfont)$
    \setmainfont{$mainfont$}
$endif$
$if(sansfont)$
    \setsansfont{$sansfont$}
$endif$
$if(monofont)$
    \setmonofont{$monofont$}
$endif$
$if(mathfont)$
    \setmathfont{$mathfont$}
$endif$
\fi
% use microtype if available
\IfFileExists{microtype.sty}{\usepackage{microtype}}{}
$if(geometry)$
\usepackage[$for(geometry)$$geometry$$sep$,$endfor$]{geometry}
$endif$
$if(natbib)$
\usepackage{natbib}
\bibliographystyle{plainnat}
$endif$
$if(biblatex)$
\usepackage{biblatex}
$if(biblio-files)$
\bibliography{$biblio-files$}
$endif$
$endif$
$if(listings)$
\usepackage{listings}
$endif$
$if(lhs)$
\lstnewenvironment{code}{\lstset{language=Haskell,basicstyle=\small\ttfamily}}{}
$endif$
$if(highlighting-macros)$
$highlighting-macros$
$endif$
$if(verbatim-in-note)$
\usepackage{fancyvrb}
$endif$
$if(tables)$
\usepackage{longtable}
$endif$
$if(graphics)$
\usepackage{graphicx}
% We will generate all images so they have a width \maxwidth. This means
% that they will get their normal width if they fit onto the page, but
% are scaled down if they would overflow the margins.
\makeatletter
\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth
\else\Gin@nat@width\fi}
\makeatother
\let\Oldincludegraphics\includegraphics
\renewcommand{\includegraphics}[1]{\Oldincludegraphics[width=\maxwidth]{#1}}
$endif$
\ifxetex
  \usepackage[setpagesize=false, % page size defined by xetex
              unicode=false, % unicode breaks when used with xetex
              xetex]{hyperref}
\else
  \usepackage[unicode=true]{hyperref}
\fi
\hypersetup{breaklinks=true,
            bookmarks=true,
            pdfauthor={$author-meta$},
            pdftitle={$title-meta$},
            colorlinks=$if(colorlinks)$true$else$false$endif$,
            urlcolor=$if(urlcolor)$$urlcolor$$else$blue$endif$,
            linkcolor=$if(linkcolor)$$linkcolor$$else$magenta$endif$,
            pdfborder={0 0 0}}
\urlstyle{same}  % don't use monospace font for urls
$if(links-as-notes)$
% Make links footnotes instead of hotlinks:
\renewcommand{\href}[2]{#2\footnote{\url{#1}}}
$endif$
$if(strikeout)$
\usepackage[normalem]{ulem}
% avoid problems with \sout in headers with hyperref:
\pdfstringdefDisableCommands{\renewcommand{\sout}{}}
$endif$

$if(numbersections)$
\setcounter{secnumdepth}{5}
$else$
\setcounter{secnumdepth}{0}
$endif$
$if(verbatim-in-note)$
\VerbatimFootnotes % allows verbatim text in footnotes
$endif$
$if(lang)$
\ifxetex
  \usepackage{polyglossia}
  \setmainlanguage{$mainlang$}
\else
  \usepackage[$lang$]{babel}
\fi
$endif$
% Pandoc toggle for numbering sections (defaults to be off)
$if(numbersections)$
$else$
\setcounter{secnumdepth}{0}
$endif$
% Pandoc header
$for(header-includes)$
$header-includes$
$endfor$

$preamble$

\begin{document}
\begin{frontmatter}

  \title{$title$}
  $for(author)$
  \author[$author.affiliation$]{$author.name$$if(author.footnote)$\corref{c1}$endif$}
  $if(author.email)$ \ead{$author.email$} $endif$
  $if(author.footnote)$ \cortext[c1]{$author.footnote$}$endif$
  $endfor$
  $for(address)$
  \address[$address.code$]{$address.address$}
  $endfor$

  \begin{abstract}
  $abstract$
  \end{abstract}
  $if(keywords)$ \begin{keyword} $for(keywords)$$keywords$$sep$ $endfor$\end{keyword}$endif$
 \end{frontmatter}

$body$

$if(natbib)$
$if(biblio-files)$
$if(biblio-title)$
$if(book-class)$
\renewcommand\bibname{$biblio-title$}
$else$
\renewcommand\refname{$biblio-title$}
$endif$
$endif$
\bibliography{$biblio-files$}

$endif$
$endif$
$if(biblatex)$
\printbibliography$if(biblio-title)$[title=$biblio-title$]$endif$

$endif$
$for(include-after)$
$include-after$

$endfor$
\end{document}