| .. |
|
CMakeLists.txt
|
aba98ec12a
Moved Wall, Edge and Grid classes from geometry.h/cpp to wall.h/cpp
|
3 年之前 |
|
base_event.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
base_event.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
bng_data_to_datamodel_converter.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
bng_data_to_datamodel_converter.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
bngl_exporter.cpp
|
eae4f1c3e8
Export of parameter BNG_UNITS into bngl
|
3 年之前 |
|
bngl_exporter.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
clamp_release_event.cpp
|
a8c29efb76
Fixed case when a concentration clamp was defined but not used
|
3 年之前 |
|
clamp_release_event.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
collision_structs.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
collision_structs.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
collision_utils.inl
|
793c3dce5a
Added dump for individual molecule
|
3 年之前 |
|
collision_utils_subparts.inl
|
f43346035e
Unified naming of 'rxn', all previous variants that used just 'rx' were
|
3 年之前 |
|
count_buffer.cpp
|
ee1711d2e2
Fixed assert check for .gdat file format
|
3 年之前 |
|
count_buffer.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
custom_function_call_event.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
defines.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
defines.h
|
38c688ae3a
Replaced Vec2 and Vec3 in Introspection and Callbacks w vector<double>
|
3 年之前 |
|
defragmentation_event.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
defragmentation_event.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
diffuse_react_event.cpp
|
d8da410f8c
Fixed case when a molecule escaped geometry after being created in a
|
3 年之前 |
|
diffuse_react_event.h
|
0a71982a69
Fixed assert in react_unimol_single_molecule and diffuse_single_molecule
|
3 年之前 |
|
diffusion_utils.inl
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
dyn_vertex_structs.h
|
03daf84885
Added default argument to Model.apply_vertex_moves to randomize order of
|
3 年之前 |
|
dyn_vertex_utils.inl
|
812f085949
Added support for for Model.pair_molecules, unpair_molecules, and
|
3 年之前 |
|
exact_disk_utils.inl
|
214d8e1d65
Fixed handling of transparent walls in MCell3 in exact_disk
|
3 年之前 |
|
geometry.cpp
|
5a797948f5
Fixed missing template parameter
|
3 年之前 |
|
geometry.h
|
83ed771e28
Updated copyright years
|
3 年之前 |
|
geometry_utils.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
geometry_utils.inl
|
f43346035e
Unified naming of 'rxn', all previous variants that used just 'rx' were
|
3 年之前 |
|
grid_position.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
grid_position.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
grid_utils.inl
|
3cba21b264
Check for forbidden release of surface molecules onto overlapped object
|
3 年之前 |
|
mcell3_world_converter.cpp
|
c93f0bd122
Improved error message when count trigget uis used in MCell4 MDL mode.
|
3 年之前 |
|
mcell3_world_converter.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
mcell4_iface_for_mcell3.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
mcell4_iface_for_mcell3.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
memory_limit_checker.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
memory_limit_checker.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
mol_or_rxn_count_event.cpp
|
2664a3bab9
Support for count region expression export to data model and from data
|
3 年之前 |
|
mol_or_rxn_count_event.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
mol_order_shuffle_event.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
mol_order_shuffle_event.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
molecule.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
molecule.h
|
f43346035e
Unified naming of 'rxn', all previous variants that used just 'rx' were
|
3 年之前 |
|
partition.cpp
|
3e00edd353
Skipping vertex moves due to paired molecules whose displacement is 0
|
3 年之前 |
|
partition.h
|
443c3e656c
Added support for cancellation of reaction in a callback
|
3 年之前 |
|
region_expr.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
region_expr.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
region_utils.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
region_utils.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
release_event.cpp
|
ff74f2b2ec
Fixed case when a molecule is released outside of a partition
|
3 年之前 |
|
release_event.h
|
4504c4f2c8
Added support for release probability
|
3 年之前 |
|
run_n_iterations_end_event.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
rxn_class_cleanup_event.cpp
|
8233db27e3
Renamed method remove_unimol_rxn_class
|
3 年之前 |
|
rxn_class_cleanup_event.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
rxn_utils.inl
|
793c3dce5a
Added dump for individual molecule
|
3 年之前 |
|
scheduler.cpp
|
20dd6acb53
Added check for event being scheduled too far into the future
|
3 年之前 |
|
scheduler.h
|
e4a8671ffa
Including rxn_ooutput data also when export_viz_data_model is called
|
3 年之前 |
|
simulation_config.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
simulation_config.h
|
57001604ab
Added option Notifications.wall_overlap_report
|
3 年之前 |
|
simulation_stats.cpp
|
6cbad42c2f
Creating a warnings file for missed rxs even when the rxn prob is < 1
|
3 年之前 |
|
simulation_stats.h
|
6cbad42c2f
Creating a warnings file for missed rxs even when the rxn prob is < 1
|
3 年之前 |
|
sort_mols_by_subpart_event.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
sort_mols_by_subpart_event.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
species_cleanup_event.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
species_cleanup_event.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
viz_output_event.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
viz_output_event.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
vtk_utils.cpp
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
vtk_utils.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
wall.cpp
|
3a66236e53
Improved error message about a malfromed wall.
|
3 年之前 |
|
wall.h
|
ddbf032a07
Fixed assert that checks Wall:wall_shared_data
|
3 年之前 |
|
wall_overlap.cpp
|
3cba21b264
Check for forbidden release of surface molecules onto overlapped object
|
3 年之前 |
|
wall_overlap.h
|
dca9881d60
Moved Partition::check_for_overlapped_walls into wall_overlap.cpp
|
3 年之前 |
|
wall_utils.h
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
wall_utils.inl
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
world.cpp
|
c04a040a9f
Improved comment
|
3 年之前 |
|
world.h
|
ff74f2b2ec
Fixed case when a molecule is released outside of a partition
|
3 年之前 |
Adam Husar