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- The files in this directory test various aspects of reactions. These are
- derived from the tests I used for validation against old mcell behavior, as
- well as against Boris' trimolecular code when I merged with macromolecules.
- I'll give a summary below of what each file is, with more detailed information
- in the header of each MDL file.
- Note that most files which use the trimolecular pathway have TIME_STEP_MAX set
- to 1.0. They all should, I think. The trimolecular code doesn't seem to
- safely use safe_diffusion_step, so in order to make fair comparisons for
- correctness, I turned off adaptive timesteps.
- * Test 01: All volume rxn types, traditional + trimol. code paths
- * Test 02: Same as test 1, but without ACCURATE_3D_REACTIONS
- * Test 06: All surface rxn types (vol surf, surf surf, vol vol surf, etc.)
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