mcell/mdl/testsuite/parser/valid/counting.mdl

REACTION_DATA_OUTPUT
{
    OUTPUT_BUFFER_SIZE = 10
    STEP = 1e-6

    {5 : "constant #1"} => countdir & "counting-1.txt"
    SHOW_EXACT_TIME = OFF
    {6 : "constant #2"} > countdir & "counting-2.txt"
    HEADER = NONE
    {7 : "constant #3"} >> countdir & "counting-3.txt"
    SHOW_EXACT_TIME = ON
    {8 : "constant #4"} >>> countdir & "counting-4.txt"
    HEADER = NO
    {9 : "constant #5"} +> countdir & "counting-5.txt"
    HEADER = YES
    {10 : "constant #6"} => countdir & "counting-6.txt"
    HEADER = "Duck, Duck, Goose"
    {
        11 : "constant #6",
        12 : "constant #7",
        13 : "constant #8"
    } => countdir & "counting-7.txt"
    HEADER = YES
    {COUNT["*", WORLD]} => countdir & "counting-8.txt"
}
REACTION_DATA_OUTPUT
{
    OUTPUT_BUFFER_SIZE = 11
    ITERATION_LIST = [[1 TO 1000 STEP 2], [1001 TO 999 STEP 1]]
    {COUNT["s_g_1", WORLD] : "s_g_1 molecules", COUNT["s_g_2", WORLD] : "s_g_2 molecules"} => countdir & "counting-9.txt"
    {SUM(COUNT["*", WORLD])} => countdir & "counting-10.txt"
    {
        COUNT[s_v_1, world.big_object.box1, BACK_HITS],
        COUNT[s_v_3, world.big_object.box1, FRONT_HITS],
        (COUNT[s_v_1, world.big_object.box1, ALL_ENCLOSED] + COUNT[s_v_3, world.big_object.box1, ALL_HITS]),
        (COUNT[s_v_1, world.big_object.box1, ESTIMATE_CONCENTRATION] * COUNT[s_v_3, world.big_object.box1, FRONT_CROSSINGS]),
        (COUNT[s_v_1, WORLD] / COUNT[s_v_3, world.big_object.box1, BACK_CROSSINGS]),
        (COUNT[s_v_1, WORLD] - COUNT[s_v_3, world.big_object.box1, ALL_CROSSINGS]),
        (- COUNT[s_v_3, WORLD]),
        2*(COUNT[s_v_1, WORLD] + COUNT[s_v_3, WORLD])+(COUNT[s_v_1, WORLD] * COUNT[s_v_3, WORLD]),
        12
    } => countdir & "counting-11.txt"
    {COUNT["s_g_1'", world.big_object.box1]} => countdir & "counting-12.txt"
    {COUNT[rxn1, WORLD]} => countdir & "counting-13.txt"
    {COUNT[s_g_1{0}, world.big_object.box1]} => countdir & "counting-14.txt"
    {COUNT[s_g_1{2}, world.big_object.box1], COUNT[s_g_1{-3}, world.big_object.box1]} => countdir & "counting-15.txt"
    {COUNT[SUBUNIT{c_s_0 : s_g_0}, WORLD]} => countdir & "counting-16.txt"
    {COUNT[SUBUNIT{c_s_0 : s_g_0 [r0001 == s_g_1 & r0010 == s_g_2]}, WORLD]} => countdir & "counting-17.txt"
}
REACTION_DATA_OUTPUT
{
    OUTPUT_BUFFER_SIZE = 12
    TIME_LIST = [[1e-6 TO 20e-6 STEP 7e-6]]
    {COUNT["c_s_0", WORLD]} => countdir & "counting-18.txt"
}
REACTION_DATA_OUTPUT
{
    OUTPUT_BUFFER_SIZE = 13
    // 2009-04-12: Was test for REACTION_DATA_OUTPUT with no output timing def, but
    //             that is a syntax error now.
    STEP=1e-6
    {TRIGGER["s_v_5", world.big_object.newbox[ALL]]} => countdir & "counting-19.txt"
    SHOW_EXACT_TIME = OFF
    {TRIGGER["s_v_4", world.big_object.newbox[ALL]]} => countdir & "counting-20.txt"
    SHOW_EXACT_TIME = ON
    {TRIGGER["s_v_0", world.big_object.newbox[ALL]]} => countdir & "counting-21.txt"
}