mcell/src4/dyn_vertex_structs.h

/******************************************************************************
 *
 * Copyright (C) 2019 by
 * The Salk Institute for Biological Studies and
 * Pittsburgh Supercomputing Center, Carnegie Mellon University
 *
 * Use of this source code is governed by an MIT-style
 * license that can be found in the LICENSE file or at
 * https://opensource.org/licenses/MIT.
 *
******************************************************************************/

#ifndef SRC4_DYN_VERTEX_STRUCTS_H_
#define SRC4_DYN_VERTEX_STRUCTS_H_

#include "defines.h"
#include "../libmcell/api/shared_structs.h"

namespace MCell {


class Partition;

struct WallMoveInfo {
  bool wall_changes_area;
  std::vector<VertexMoveInfo*> vertex_moves;
};

typedef std::map<wall_index_t, WallMoveInfo> WallsWithTheirMovesMap;

struct VolumeMoleculeMoveInfo {
  VolumeMoleculeMoveInfo(const molecule_id_t molecule_id_, const wall_index_t wall_index_, const bool place_above_)
    : molecule_id(molecule_id_), wall_index(wall_index_), place_above(place_above_) {
  }
  // molecule to move
  molecule_id_t molecule_id;
  // which wall moved this molecule first
  wall_index_t wall_index;
  // above or below
  bool place_above;
};
typedef std::vector<VolumeMoleculeMoveInfo> VolumeMoleculeMoveInfoVector;

struct SurfaceMoleculeMoveInfo {
  SurfaceMoleculeMoveInfo(const molecule_id_t molecule_id_, const wall_index_t wall_index_, const Vec3 pos3d_)
    : molecule_id(molecule_id_), wall_index(wall_index_), pos3d(pos3d_) {
  }
  // molecule to move
  molecule_id_t molecule_id;
  // which wall moved this molecule first
  wall_index_t wall_index;
  // above or below
  Vec3 pos3d;
};
typedef std::vector<SurfaceMoleculeMoveInfo> SurfaceMoleculeMoveInfoVector;

} // namespace MCell

#endif /* SRC4_DYN_VERTEX_STRUCTS_H_ */