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- /******************************************************************************
- *
- * Copyright (C) 2021 by
- * The Salk Institute for Biological Studies
- *
- * Use of this source code is governed by an MIT-style
- * license that can be found in the LICENSE file or at
- * https://opensource.org/licenses/MIT.
- *
- ******************************************************************************/
- #ifndef API_GEN_SURFACE_CLASS_H
- #define API_GEN_SURFACE_CLASS_H
- #include "api/api_common.h"
- #include "api/surface_property.h"
- namespace MCell {
- namespace API {
- class SurfaceClass;
- class Complex;
- class SurfaceProperty;
- class PythonExportContext;
- #define SURFACE_CLASS_CTOR() \
- SurfaceClass( \
- const std::string& name_, \
- const std::vector<std::shared_ptr<SurfaceProperty>> properties_ = std::vector<std::shared_ptr<SurfaceProperty>>(), \
- const SurfacePropertyType type_ = SurfacePropertyType::UNSET, \
- std::shared_ptr<Complex> affected_complex_pattern_ = nullptr, \
- const double concentration_ = FLT_UNSET \
- ) : GenSurfaceClass(type_,affected_complex_pattern_,concentration_) { \
- class_name = "SurfaceClass"; \
- name = name_; \
- properties = properties_; \
- type = type_; \
- affected_complex_pattern = affected_complex_pattern_; \
- concentration = concentration_; \
- postprocess_in_ctor(); \
- check_semantics(); \
- } \
- SurfaceClass(DefaultCtorArgType) : \
- GenSurfaceClass(DefaultCtorArgType()) { \
- set_all_attributes_as_default_or_unset(); \
- set_all_custom_attributes_to_default(); \
- }
- class GenSurfaceClass: public SurfaceProperty {
- public:
- GenSurfaceClass(
- const SurfacePropertyType type_ = SurfacePropertyType::UNSET,
- std::shared_ptr<Complex> affected_complex_pattern_ = nullptr,
- const double concentration_ = FLT_UNSET
- ) : SurfaceProperty(type_,affected_complex_pattern_,concentration_) {
- }
- GenSurfaceClass(DefaultCtorArgType) {
- }
- void postprocess_in_ctor() override {}
- void check_semantics() const override;
- void set_initialized() override;
- void set_all_attributes_as_default_or_unset() override;
- std::shared_ptr<SurfaceClass> copy_surface_class() const;
- std::shared_ptr<SurfaceClass> deepcopy_surface_class(py::dict = py::dict()) const;
- virtual bool __eq__(const SurfaceClass& other) const;
- virtual bool eq_nonarray_attributes(const SurfaceClass& other, const bool ignore_name = false) const;
- bool operator == (const SurfaceClass& other) const { return __eq__(other);}
- bool operator != (const SurfaceClass& other) const { return !__eq__(other);}
- std::string to_str(const bool all_details=false, const std::string ind="") const override;
- virtual std::string export_to_python(std::ostream& out, PythonExportContext& ctx);
- virtual std::string export_vec_properties(std::ostream& out, PythonExportContext& ctx, const std::string& parent_name);
- // --- attributes ---
- std::vector<std::shared_ptr<SurfaceProperty>> properties;
- virtual void set_properties(const std::vector<std::shared_ptr<SurfaceProperty>> new_properties_) {
- if (initialized) {
- throw RuntimeError("Value 'properties' of object with name " + name + " (class " + class_name + ") "
- "cannot be set after model was initialized.");
- }
- cached_data_are_uptodate = false;
- properties = new_properties_;
- }
- virtual std::vector<std::shared_ptr<SurfaceProperty>>& get_properties() {
- cached_data_are_uptodate = false; // arrays and other data can be modified through getters
- return properties;
- }
- // --- methods ---
- }; // GenSurfaceClass
- class SurfaceClass;
- py::class_<SurfaceClass> define_pybinding_SurfaceClass(py::module& m);
- } // namespace API
- } // namespace MCell
- #endif // API_GEN_SURFACE_CLASS_H
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