mcell/libmcell/generated/gen_release_site.h

/******************************************************************************
 *
 * Copyright (C) 2021 by
 * The Salk Institute for Biological Studies
 *
 * Use of this source code is governed by an MIT-style
 * license that can be found in the LICENSE file or at
 * https://opensource.org/licenses/MIT.
 *
******************************************************************************/

#ifndef API_GEN_RELEASE_SITE_H
#define API_GEN_RELEASE_SITE_H

#include "api/api_common.h"
#include "api/base_data_class.h"

namespace MCell {
namespace API {

class ReleaseSite;
class Complex;
class MoleculeReleaseInfo;
class Region;
class ReleasePattern;
class PythonExportContext;

#define RELEASE_SITE_CTOR() \
    ReleaseSite( \
        const std::string& name_, \
        std::shared_ptr<Complex> complex_ = nullptr, \
        const std::vector<std::shared_ptr<MoleculeReleaseInfo>> molecule_list_ = std::vector<std::shared_ptr<MoleculeReleaseInfo>>(), \
        const double release_time_ = 0, \
        std::shared_ptr<ReleasePattern> release_pattern_ = nullptr, \
        const Shape shape_ = Shape::UNSET, \
        std::shared_ptr<Region> region_ = nullptr, \
        const std::vector<double> location_ = std::vector<double>(), \
        const double site_diameter_ = 0, \
        const double site_radius_ = FLT_UNSET, \
        const double number_to_release_ = FLT_UNSET, \
        const double density_ = FLT_UNSET, \
        const double concentration_ = FLT_UNSET, \
        const double release_probability_ = 1 \
    ) { \
      class_name = "ReleaseSite"; \
      name = name_; \
      complex = complex_; \
      molecule_list = molecule_list_; \
      release_time = release_time_; \
      release_pattern = release_pattern_; \
      shape = shape_; \
      region = region_; \
      location = location_; \
      site_diameter = site_diameter_; \
      site_radius = site_radius_; \
      number_to_release = number_to_release_; \
      density = density_; \
      concentration = concentration_; \
      release_probability = release_probability_; \
      postprocess_in_ctor(); \
      check_semantics(); \
    } \
    ReleaseSite(DefaultCtorArgType) : \
      GenReleaseSite(DefaultCtorArgType()) { \
      set_all_attributes_as_default_or_unset(); \
      set_all_custom_attributes_to_default(); \
    }

class GenReleaseSite: public BaseDataClass {
public:
  GenReleaseSite() {
  }
  GenReleaseSite(DefaultCtorArgType) {
  }
  void postprocess_in_ctor() override {}
  void check_semantics() const override;
  void set_initialized() override;
  void set_all_attributes_as_default_or_unset() override;

  std::shared_ptr<ReleaseSite> copy_release_site() const;
  std::shared_ptr<ReleaseSite> deepcopy_release_site(py::dict = py::dict()) const;
  virtual bool __eq__(const ReleaseSite& other) const;
  virtual bool eq_nonarray_attributes(const ReleaseSite& other, const bool ignore_name = false) const;
  bool operator == (const ReleaseSite& other) const { return __eq__(other);}
  bool operator != (const ReleaseSite& other) const { return !__eq__(other);}
  std::string to_str(const bool all_details=false, const std::string ind="") const override;

  std::string export_to_python(std::ostream& out, PythonExportContext& ctx) override;
  virtual std::string export_vec_molecule_list(std::ostream& out, PythonExportContext& ctx, const std::string& parent_name);
  virtual std::string export_vec_location(std::ostream& out, PythonExportContext& ctx, const std::string& parent_name);


  // --- attributes ---
  std::shared_ptr<Complex> complex;
  virtual void set_complex(std::shared_ptr<Complex> new_complex_) {
    if (initialized) {
      throw RuntimeError("Value 'complex' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    complex = new_complex_;
  }
  virtual std::shared_ptr<Complex> get_complex() const {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return complex;
  }

  std::vector<std::shared_ptr<MoleculeReleaseInfo>> molecule_list;
  virtual void set_molecule_list(const std::vector<std::shared_ptr<MoleculeReleaseInfo>> new_molecule_list_) {
    if (initialized) {
      throw RuntimeError("Value 'molecule_list' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    molecule_list = new_molecule_list_;
  }
  virtual std::vector<std::shared_ptr<MoleculeReleaseInfo>>& get_molecule_list() {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return molecule_list;
  }

  double release_time;
  virtual void set_release_time(const double new_release_time_) {
    if (initialized) {
      throw RuntimeError("Value 'release_time' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    release_time = new_release_time_;
  }
  virtual double get_release_time() const {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return release_time;
  }

  std::shared_ptr<ReleasePattern> release_pattern;
  virtual void set_release_pattern(std::shared_ptr<ReleasePattern> new_release_pattern_) {
    if (initialized) {
      throw RuntimeError("Value 'release_pattern' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    release_pattern = new_release_pattern_;
  }
  virtual std::shared_ptr<ReleasePattern> get_release_pattern() const {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return release_pattern;
  }

  Shape shape;
  virtual void set_shape(const Shape new_shape_) {
    if (initialized) {
      throw RuntimeError("Value 'shape' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    shape = new_shape_;
  }
  virtual Shape get_shape() const {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return shape;
  }

  std::shared_ptr<Region> region;
  virtual void set_region(std::shared_ptr<Region> new_region_) {
    if (initialized) {
      throw RuntimeError("Value 'region' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    region = new_region_;
  }
  virtual std::shared_ptr<Region> get_region() const {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return region;
  }

  std::vector<double> location;
  virtual void set_location(const std::vector<double> new_location_) {
    if (initialized) {
      throw RuntimeError("Value 'location' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    location = new_location_;
  }
  virtual std::vector<double>& get_location() {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return location;
  }

  double site_diameter;
  virtual void set_site_diameter(const double new_site_diameter_) {
    if (initialized) {
      throw RuntimeError("Value 'site_diameter' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    site_diameter = new_site_diameter_;
  }
  virtual double get_site_diameter() const {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return site_diameter;
  }

  double site_radius;
  virtual void set_site_radius(const double new_site_radius_) {
    if (initialized) {
      throw RuntimeError("Value 'site_radius' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    site_radius = new_site_radius_;
  }
  virtual double get_site_radius() const {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return site_radius;
  }

  double number_to_release;
  virtual void set_number_to_release(const double new_number_to_release_) {
    if (initialized) {
      throw RuntimeError("Value 'number_to_release' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    number_to_release = new_number_to_release_;
  }
  virtual double get_number_to_release() const {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return number_to_release;
  }

  double density;
  virtual void set_density(const double new_density_) {
    if (initialized) {
      throw RuntimeError("Value 'density' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    density = new_density_;
  }
  virtual double get_density() const {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return density;
  }

  double concentration;
  virtual void set_concentration(const double new_concentration_) {
    if (initialized) {
      throw RuntimeError("Value 'concentration' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    concentration = new_concentration_;
  }
  virtual double get_concentration() const {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return concentration;
  }

  double release_probability;
  virtual void set_release_probability(const double new_release_probability_) {
    if (initialized) {
      throw RuntimeError("Value 'release_probability' of object with name " + name + " (class " + class_name + ") "
                         "cannot be set after model was initialized.");
    }
    cached_data_are_uptodate = false;
    release_probability = new_release_probability_;
  }
  virtual double get_release_probability() const {
    cached_data_are_uptodate = false; // arrays and other data can be modified through getters
    return release_probability;
  }

  // --- methods ---
}; // GenReleaseSite

class ReleaseSite;
py::class_<ReleaseSite> define_pybinding_ReleaseSite(py::module& m);
} // namespace API
} // namespace MCell

#endif // API_GEN_RELEASE_SITE_H