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- /******************************************************************************
- *
- * Copyright (C) 2021 by
- * The Salk Institute for Biological Studies
- *
- * Use of this source code is governed by an MIT-style
- * license that can be found in the LICENSE file or at
- * https://opensource.org/licenses/MIT.
- *
- ******************************************************************************/
- #ifndef API_GEN_COUNT_H
- #define API_GEN_COUNT_H
- #include "api/api_common.h"
- #include "api/base_data_class.h"
- namespace MCell {
- namespace API {
- class Count;
- class CountTerm;
- class PythonExportContext;
- #define COUNT_CTOR() \
- Count( \
- const std::string& name_ = STR_UNSET, \
- const std::string& file_name_ = STR_UNSET, \
- std::shared_ptr<CountTerm> expression_ = nullptr, \
- const double multiplier_ = 1, \
- const double every_n_timesteps_ = 1, \
- const CountOutputFormat output_format_ = CountOutputFormat::AUTOMATIC_FROM_EXTENSION \
- ) { \
- class_name = "Count"; \
- name = name_; \
- file_name = file_name_; \
- expression = expression_; \
- multiplier = multiplier_; \
- every_n_timesteps = every_n_timesteps_; \
- output_format = output_format_; \
- postprocess_in_ctor(); \
- check_semantics(); \
- } \
- Count(DefaultCtorArgType) : \
- GenCount(DefaultCtorArgType()) { \
- set_all_attributes_as_default_or_unset(); \
- set_all_custom_attributes_to_default(); \
- }
- class GenCount: public BaseDataClass {
- public:
- GenCount() {
- }
- GenCount(DefaultCtorArgType) {
- }
- void postprocess_in_ctor() override {}
- void check_semantics() const override;
- void set_initialized() override;
- void set_all_attributes_as_default_or_unset() override;
- std::shared_ptr<Count> copy_count() const;
- std::shared_ptr<Count> deepcopy_count(py::dict = py::dict()) const;
- virtual bool __eq__(const Count& other) const;
- virtual bool eq_nonarray_attributes(const Count& other, const bool ignore_name = false) const;
- bool operator == (const Count& other) const { return __eq__(other);}
- bool operator != (const Count& other) const { return !__eq__(other);}
- std::string to_str(const bool all_details=false, const std::string ind="") const override;
- std::string export_to_python(std::ostream& out, PythonExportContext& ctx) override;
- // --- attributes ---
- std::string file_name;
- virtual void set_file_name(const std::string& new_file_name_) {
- if (initialized) {
- throw RuntimeError("Value 'file_name' of object with name " + name + " (class " + class_name + ") "
- "cannot be set after model was initialized.");
- }
- cached_data_are_uptodate = false;
- file_name = new_file_name_;
- }
- virtual const std::string& get_file_name() const {
- cached_data_are_uptodate = false; // arrays and other data can be modified through getters
- return file_name;
- }
- std::shared_ptr<CountTerm> expression;
- virtual void set_expression(std::shared_ptr<CountTerm> new_expression_) {
- if (initialized) {
- throw RuntimeError("Value 'expression' of object with name " + name + " (class " + class_name + ") "
- "cannot be set after model was initialized.");
- }
- cached_data_are_uptodate = false;
- expression = new_expression_;
- }
- virtual std::shared_ptr<CountTerm> get_expression() const {
- cached_data_are_uptodate = false; // arrays and other data can be modified through getters
- return expression;
- }
- double multiplier;
- virtual void set_multiplier(const double new_multiplier_) {
- if (initialized) {
- throw RuntimeError("Value 'multiplier' of object with name " + name + " (class " + class_name + ") "
- "cannot be set after model was initialized.");
- }
- cached_data_are_uptodate = false;
- multiplier = new_multiplier_;
- }
- virtual double get_multiplier() const {
- cached_data_are_uptodate = false; // arrays and other data can be modified through getters
- return multiplier;
- }
- double every_n_timesteps;
- virtual void set_every_n_timesteps(const double new_every_n_timesteps_) {
- if (initialized) {
- throw RuntimeError("Value 'every_n_timesteps' of object with name " + name + " (class " + class_name + ") "
- "cannot be set after model was initialized.");
- }
- cached_data_are_uptodate = false;
- every_n_timesteps = new_every_n_timesteps_;
- }
- virtual double get_every_n_timesteps() const {
- cached_data_are_uptodate = false; // arrays and other data can be modified through getters
- return every_n_timesteps;
- }
- CountOutputFormat output_format;
- virtual void set_output_format(const CountOutputFormat new_output_format_) {
- if (initialized) {
- throw RuntimeError("Value 'output_format' of object with name " + name + " (class " + class_name + ") "
- "cannot be set after model was initialized.");
- }
- cached_data_are_uptodate = false;
- output_format = new_output_format_;
- }
- virtual CountOutputFormat get_output_format() const {
- cached_data_are_uptodate = false; // arrays and other data can be modified through getters
- return output_format;
- }
- // --- methods ---
- virtual double get_current_value() = 0;
- }; // GenCount
- class Count;
- py::class_<Count> define_pybinding_Count(py::module& m);
- } // namespace API
- } // namespace MCell
- #endif // API_GEN_COUNT_H
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