mcell/libmcell/api/introspection.h

/******************************************************************************
 *
 * Copyright (C) 2020 by
 * The Salk Institute for Biological Studies
 *
 * Use of this source code is governed by an MIT-style
 * license that can be found in the LICENSE file or at
 * https://opensource.org/licenses/MIT.
 *
******************************************************************************/

#ifndef API_INTROSPECTION_H
#define API_INTROSPECTION_H

#include "generated/gen_introspection.h"
#include "api/api_common.h"

namespace MCell {

class World;

namespace API {

class Model;

// this class is used only as a base to Model, it is not provided through API
class Introspection: public GenIntrospection {
public:
  Introspection() :
    model_inst(nullptr),
    world(nullptr) {
  }

  Introspection(DefaultCtorArgType) :
    model_inst(nullptr),
    world(nullptr) {
  }

  void initialize_introspection(Model* model_);

  std::vector<int> get_molecule_ids(std::shared_ptr<Complex> pattern = nullptr) override;
  std::shared_ptr<Molecule> get_molecule(const int id) override;

  std::string get_species_name(const int species_id) override;

  std::vector<double> get_vertex(std::shared_ptr<GeometryObject> object, const int vertex_index) override;
  std::shared_ptr<Wall> get_wall(std::shared_ptr<GeometryObject> object, const int wall_index) override;

  std::vector<double> get_vertex_unit_normal(std::shared_ptr<GeometryObject> object, const int vertex_index) override;
  std::vector<double> get_wall_unit_normal(std::shared_ptr<GeometryObject> object, const int wall_index) override;

  std::shared_ptr<Color> get_wall_color(std::shared_ptr<GeometryObject> object, const int wall_index) override;
  void set_wall_color(std::shared_ptr<GeometryObject> object, const int wall_index, std::shared_ptr<Color> color) override;

  void dump() const {}

private:
  // not using name model because class Model inherits Introspection and
  // this made code a bit confusing
  Model* model_inst;

  World* world;
};

} // namespace API
} // namespace MCell

#endif // API_INTROSPECTION_H