REACTION_DATA_OUTPUT { OUTPUT_BUFFER_SIZE = 10 STEP = 1e-6 {5 : "constant #1"} => countdir & "counting-1.txt" SHOW_EXACT_TIME = OFF {6 : "constant #2"} > countdir & "counting-2.txt" HEADER = NONE {7 : "constant #3"} >> countdir & "counting-3.txt" SHOW_EXACT_TIME = ON {8 : "constant #4"} >>> countdir & "counting-4.txt" HEADER = NO {9 : "constant #5"} +> countdir & "counting-5.txt" HEADER = YES {10 : "constant #6"} => countdir & "counting-6.txt" HEADER = "Duck, Duck, Goose" { 11 : "constant #6", 12 : "constant #7", 13 : "constant #8" } => countdir & "counting-7.txt" HEADER = YES {COUNT["*", WORLD]} => countdir & "counting-8.txt" } REACTION_DATA_OUTPUT { OUTPUT_BUFFER_SIZE = 11 ITERATION_LIST = [[1 TO 1000 STEP 2], [1001 TO 999 STEP 1]] {COUNT["s_g_1", WORLD] : "s_g_1 molecules", COUNT["s_g_2", WORLD] : "s_g_2 molecules"} => countdir & "counting-9.txt" {SUM(COUNT["*", WORLD])} => countdir & "counting-10.txt" { COUNT[s_v_1, world.big_object.box1, BACK_HITS], COUNT[s_v_3, world.big_object.box1, FRONT_HITS], (COUNT[s_v_1, world.big_object.box1, ALL_ENCLOSED] + COUNT[s_v_3, world.big_object.box1, ALL_HITS]), (COUNT[s_v_1, world.big_object.box1, ESTIMATE_CONCENTRATION] * COUNT[s_v_3, world.big_object.box1, FRONT_CROSSINGS]), (COUNT[s_v_1, WORLD] / COUNT[s_v_3, world.big_object.box1, BACK_CROSSINGS]), (COUNT[s_v_1, WORLD] - COUNT[s_v_3, world.big_object.box1, ALL_CROSSINGS]), (- COUNT[s_v_3, WORLD]), 2*(COUNT[s_v_1, WORLD] + COUNT[s_v_3, WORLD])+(COUNT[s_v_1, WORLD] * COUNT[s_v_3, WORLD]), 12 } => countdir & "counting-11.txt" {COUNT["s_g_1'", world.big_object.box1]} => countdir & "counting-12.txt" {COUNT[rxn1, WORLD]} => countdir & "counting-13.txt" {COUNT[s_g_1{0}, world.big_object.box1]} => countdir & "counting-14.txt" {COUNT[s_g_1{2}, world.big_object.box1], COUNT[s_g_1{-3}, world.big_object.box1]} => countdir & "counting-15.txt" {COUNT[SUBUNIT{c_s_0 : s_g_0}, WORLD]} => countdir & "counting-16.txt" {COUNT[SUBUNIT{c_s_0 : s_g_0 [r0001 == s_g_1 & r0010 == s_g_2]}, WORLD]} => countdir & "counting-17.txt" } REACTION_DATA_OUTPUT { OUTPUT_BUFFER_SIZE = 12 TIME_LIST = [[1e-6 TO 20e-6 STEP 7e-6]] {COUNT["c_s_0", WORLD]} => countdir & "counting-18.txt" } REACTION_DATA_OUTPUT { OUTPUT_BUFFER_SIZE = 13 // 2009-04-12: Was test for REACTION_DATA_OUTPUT with no output timing def, but // that is a syntax error now. STEP=1e-6 {TRIGGER["s_v_5", world.big_object.newbox[ALL]]} => countdir & "counting-19.txt" SHOW_EXACT_TIME = OFF {TRIGGER["s_v_4", world.big_object.newbox[ALL]]} => countdir & "counting-20.txt" SHOW_EXACT_TIME = ON {TRIGGER["s_v_0", world.big_object.newbox[ALL]]} => countdir & "counting-21.txt" }