#!/usr/bin/env python """ This is free and unencumbered software released into the public domain. Anyone is free to copy, modify, publish, use, compile, sell, or distribute this software, either in source code form or as a compiled binary, for any purpose, commercial or non-commercial, and by any means. In jurisdictions that recognize copyright laws, the author or authors of this software dedicate any and all copyright interest in the software to the public domain. We make this dedication for the benefit of the public at large and to the detriment of our heirs and successors. We intend this dedication to be an overt act of relinquishment in perpetuity of all present and future rights to this software under copyright law. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. For more information, please refer to [http://unlicense.org] """ import numpy as np import pandas as pd import matplotlib.pyplot as plt import os import sys from itertools import count # for now a simple scripts that prints averages of last n values of react_data files # usage: # python3 reac_data_analyzer.py N # - N is the number of the last observable counts from react_data outputs that will be averaged # # function collectreturns def get_last_observable_counts(num_last_samples_to_avg=1): counts = {} num_seeds = 0 seed_dirs = os.listdir() # go through all seed_* directories for seed_dir in seed_dirs: if not seed_dir.startswith('seed_'): continue # we need the total number of directories to compute an average later num_seeds += 1 # go through all *.dat files in the seed directory file_list = os.listdir(seed_dir) for file in file_list: file_path = os.path.join(seed_dir, file) # we care only about .dat files if os.path.isfile(file_path) and file.endswith('.dat'): print("Processing " + file_path) observable = os.path.splitext(file)[0] if observable.endswith('_MDLString'): observable = observable[:-len('_MDLString')] # read the .dat file into a pandas dataframe df = pd.read_csv(file_path, sep=' ', names=['time', 'count']) #print(df.tail(num_last_samples_to_avg)['count'].mean()) #print("From " + observable) #sys.exit() # get average of the last N items avg_cnt = df.tail(num_last_samples_to_avg)['count'].mean() # and accumulate the observable count if observable in counts: counts[observable] += avg_cnt else: counts[observable] = avg_cnt # compute average of the sums of averages we computed above res = {} for v,c in sorted(counts.items()): res[v] = c / num_seeds return res # process argument num_last_samples_to_avg = 1 if len(sys.argv) == 2: num_last_samples_to_avg = int(sys.argv[1]) # read all *.dat files in the current directory and return a # dictionary observable -> average count avg_counts = get_last_observable_counts(num_last_samples_to_avg) for v,c in sorted(avg_counts.items()): print(v + ": " + str(c))