 Adam Husar
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4f57c3903b
BNGL grammar now requires newlines to be placed at the end of lines
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3 年之前 |
|
Adam Husar
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7893c38d42
Compiler warnings cleanup in bng lib
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3 年之前 |
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Adam Husar
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6455a68497
Handling of intermembrane surf-surf reactions with compartments that
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3 年之前 |
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Adam Husar
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e4321f9f62
Added method Model.get_species_name
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3 年之前 |
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Adam Husar
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99df1ab6e1
MCell4 iteration count printouts now use the total iterations hint to
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3 年之前 |
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Adam Husar
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c15a148323
Model.run_reaction now returns list of product ids
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3 年之前 |
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Adam Husar
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d4ba58986f
Fixed customization file name
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3 年之前 |
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Adam Husar
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c2544556a8
Improved error message when empty list argument to constructor is
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3 年之前 |
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Adam Husar
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d12592732c
Added method.run_reaction, for now limited to unimol rxns
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3 年之前 |
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Adam Husar
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269e955fe8
Missed files for previous commit
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3 年之前 |
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Adam Husar
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ad1a512381
Rxn callback is not called after reaction is processed and return
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3 年之前 |
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Adam Husar
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44721f8a3d
Added support for multiple rxn callbacks at the same time
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3 年之前 |
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Adam Husar
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0732eb3b88
Removed information on second surface reactant from ReactionInfo because
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3 年之前 |
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Adam Husar
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3597323be8
Setting molecule type for molecule introspection
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3 年之前 |
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Adam Husar
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dc3216114b
Extended molecule introspection to also provide information on surface
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3 年之前 |
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Adam Husar
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6d863501b4
Moved introspcection-related methods from Model into a new class
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3 年之前 |
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Adam Husar
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386ef79b49
Fixed handling of argument -j in mcell4_runner.py
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4 年之前 |
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Adam Husar
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1b289bcadb
Initial support for intermembrane surf-surf reactions
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4 年之前 |
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Adam Husar
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75deee8b0b
Several fixes in customization module name and using MODEL_PATH when
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4 年之前 |
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Adam Husar
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d05a5bbc5c
Added check that model must be initialized for export_data_model
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4 年之前 |
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Adam Husar
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e262948d5e
Preparation for intermembrane surf-surf reactions
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4 年之前 |
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Adam Husar
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73733144a1
Disabled MCell3 pymcell build
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4 年之前 |
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Adam Husar
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46a757d69b
Added concentration clamp to changelog
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4 年之前 |
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Adam Husar
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63874e3bc8
Updated changelog
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4 年之前 |
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Adam Husar
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9ce141b6b2
Added libmcell dependency on version_h
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4 年之前 |
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Adam Husar
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b02302c816
Merge branch 'mcell4_dev' of https://github.com/mcellteam/mcell.git into mcell4_dev
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4 年之前 |
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Adam Husar
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9c2b8ba7f3
Updated version and added attribute __version__ to the mcell module and
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4 年之前 |
|
Adam Husar
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513013bbec
Revert "Updated pybind11 from v2.2.4 to v2.6.1"
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4 年之前 |
|
Adam Husar
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34ffbc92f6
Minor fixed for MacOS build
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4 年之前 |
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Adam Husar
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8c0c74faf9
Removed call to singleton_pool::purge_memory because it seems to do
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4 年之前 |
