 Adam Husar
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3a66236e53
Improved error message about a malfromed wall.
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3 年之前 |
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Adam Husar
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7f60d1afc8
Fixed timed buffer flush
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3 年之前 |
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Adam Husar
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ddbf032a07
Fixed assert that checks Wall:wall_shared_data
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3 年之前 |
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Adam Husar
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1faf2eebaf
Moved initialization of surface regions into model
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3 年之前 |
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Adam Husar
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812f085949
Added support for for Model.pair_molecules, unpair_molecules, and
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3 年之前 |
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Adam Husar
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4191554384
Added randomness to the order of objects to which dynamic geometry is
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3 年之前 |
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Adam Husar
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38e5e7c3e9
Cleaned up compilation warnings with gcc 10 (except for bison warnings)
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3 年之前 |
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Adam Husar
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76d4d5c204
Incremented version
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3 年之前 |
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Adam Husar
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40316d69ef
Removed unused method get_molecule_index
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3 年之前 |
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Adam Husar
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8233db27e3
Renamed method remove_unimol_rxn_class
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3 年之前 |
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Adam Husar
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6940602c01
Revert "Tentative fix of case when a molecule escapes enclosed object"
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3 年之前 |
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Adam Husar
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83ed771e28
Updated copyright years
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3 年之前 |
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Adam Husar
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53b63d1e30
Updated documentation for Count.get_current_value
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3 年之前 |
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Adam Husar
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5a797948f5
Fixed missing template parameter
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3 年之前 |
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Adam Husar
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c0b35ed95b
Tentative fix of case when a molecule escapes enclosed object
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3 年之前 |
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Adam Husar
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6a4d2aebc1
Fixed checkpoint storing when additional checkpoints are scheduled
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3 年之前 |
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Adam Husar
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88dd542825
Added check that overlapped object cannot be a BNGL compartment
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3 年之前 |
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Adam Husar
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3cba21b264
Check for forbidden release of surface molecules onto overlapped object
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3 年之前 |
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Adam Husar
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bdda0a0bfb
Handling of overlapped walls in ray_trace
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3 年之前 |
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Adam Husar
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57001604ab
Added option Notifications.wall_overlap_report
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3 年之前 |
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Adam Husar
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a7f48547f8
Added method geometry_utils.validate_volumetric_mesh
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3 年之前 |
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Adam Husar
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10a676cae3
Setting of flag GeometryObject::is_fully_transparent for overlapping
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3 年之前 |
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Adam Husar
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7303f8eae8
New approach to overlapped walls that requires one object to be fully
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3 年之前 |
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Adam Husar
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dca9881d60
Moved Partition::check_for_overlapped_walls into wall_overlap.cpp
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3 年之前 |
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Adam Husar
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a89bcd9dca
Wall object has now a pointer to shared wall data
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3 年之前 |
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Adam Husar
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eae7027b28
Replaced Partition::finalize_wall_creation with finalize_walls, removed
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3 年之前 |
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Adam Husar
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465591e435
Renamed Wall::precompute_wall_constants and reinit_edge_constants
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3 年之前 |
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Adam Husar
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f4e5654837
Preparation for wall overlap support
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3 年之前 |
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Adam Husar
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b0b12dc6d7
Using MCell4 walls overlap check with mcell -mcell4
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3 年之前 |
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Adam Husar
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aba98ec12a
Moved Wall, Edge and Grid classes from geometry.h/cpp to wall.h/cpp
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3 年之前 |
