 Adam Husar
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6e94bb3c28
Extra check in rxn_rule/are_replaceable_elem_mols - all connected elem
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3 年之前 |
|
Adam Husar
|
33e224b08c
Merge remote-tracking branch 'origin/mcell4_dev' into mcell4_bngl_molecule_change
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3 年之前 |
|
Adam Husar
|
12ca6b7382
Fixed wrong search in cache in
|
3 年之前 |
|
Adam Husar
|
ca5f515da0
Merge remote-tracking branch 'origin/mcell4_dev' into mcell4_bngl_molecule_change
|
3 年之前 |
|
Adam Husar
|
e614b40f09
Handling rxn patterns @PM:s(c!1).c(s!1) that must be transformed to
|
3 年之前 |
|
Adam Husar
|
5bf6cc6341
Partial preparation for handling reactions in the form B.A_vol ->
|
3 年之前 |
|
Adam Husar
|
1fee54a7c5
Not requiring bng data for Species::dump
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3 年之前 |
|
Adam Husar
|
06bdbb701c
Overriding compartment if it does not match instead of error
|
3 年之前 |
|
Adam Husar
|
d7e80b202d
Using prefixes for component and elementary mol types in python
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3 年之前 |
|
Adam Husar
|
d6f9730520
Ignoring when version is not set
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3 年之前 |
|
Adam Husar
|
57b7af72a0
Fixed handling of viz output-all iterations, it was ignored before
|
3 年之前 |
|
Adam Husar
|
1b1fd5b5d3
Importing parameters module as from parameters import * in model.py
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3 年之前 |
|
Adam Husar
|
8e1b7f969b
Generating API documentation into separate files based on category
|
3 年之前 |
|
Adam Husar
|
2083800e19
Merge branch 'mcell4_compartments_rework' into mcell4_dev
|
3 年之前 |
|
Adam Husar
|
6c01d9ae7e
Passing shared.parameter_overrides to BNGL load functions
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3 年之前 |
|
Adam Husar
|
c439d23086
Improved customization template comment, importing module 'shared'
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3 年之前 |
|
Adam Husar
|
53cf22d2d7
Support for overridable parameters when generating model from data model
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3 年之前 |
|
Adam Husar
|
4af4c86361
Increased version number
|
3 年之前 |
|
Adam Husar
|
be15505dc0
Added check that a product tile can be reached for surface reaction
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3 年之前 |
|
Adam Husar
|
e03b951dee
Preparation for handling of restricted regions in
|
3 年之前 |
|
Adam Husar
|
4db462fa1e
Added argument search_for_reactant to
|
3 年之前 |
|
Adam Husar
|
c18ff9acbc
Fixed region set comparison in
|
3 年之前 |
|
Adam Husar
|
d2e859d66e
Fixed handling of reactive surfaces where the reactant is ALL
|
3 年之前 |
|
Adam Husar
|
f36f28b7ef
Fixed MolOrRxnCountTerm::dump
|
3 年之前 |
|
Adam Husar
|
847c1d5301
Initial support for BNGL builtin functions
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3 年之前 |
|
Adam Husar
|
ebff8f662b
Initial support for functions in data model parameters, these functions
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3 年之前 |
|
Adam Husar
|
904e3fa90b
Minor improvement of a warning message
|
3 年之前 |
|
Adam Husar
|
bc0dde656f
Added final warnings that tell that bimol rxn probability was higher
|
3 年之前 |
|
Adam Husar
|
e41ee47c74
Added check for undefined parameters
|
3 年之前 |
|
Adam Husar
|
16e9e9ad5a
Allowing a combination of species flags in mdl->mcell4 conversion
|
3 年之前 |
