 Adam Husar
|
0003915c31
Prepared diffuse and react event for configurable pos_t, renamed
|
3 年之前 |
|
Adam Husar
|
008daf5ba3
Another set of changes towards configurable 32/64-bit type pos_t
|
3 年之前 |
|
Adam Husar
|
775c12e789
Preparation for a new floating point type pos_t repres. 32-bit float
|
3 年之前 |
|
Adam Husar
|
72694586b0
Atttempt to replace float_T with pos, however unsuccesful (no difference
|
3 年之前 |
|
Adam Husar
|
581255486f
Setting debug_requires_diffusion_constants of BNGConfig
|
3 年之前 |
|
Adam Husar
|
177a0c603f
Added documentation on visualization file formats
|
3 年之前 |
|
Adam Husar
|
72d372efda
Added API overview section with description of model execution phases
|
3 年之前 |
|
Adam Husar
|
3f300bc483
Vector attributes in API classes are now returned as a references to
|
3 年之前 |
|
Adam Husar
|
b768a76a59
Initial step towards vectors modifiable on the Python side, created
|
3 年之前 |
|
Adam Husar
|
9d84ebd95d
Added a utility script with an example that shows how to modify BNGL
|
3 年之前 |
|
Adam Husar
|
f0a722d644
Renamed Instantiation.load_bngl_seed_species to
|
3 年之前 |
|
Adam Husar
|
fc7211d96d
Moved BNG library and its dependencies to a separate repository, updated
|
3 年之前 |
|
Adam Husar
|
1798515935
Simplified bng_analysis example by using director parsing of complexes
|
3 年之前 |
|
Adam Husar
|
f78754177f
Renamed *Util namespaces to *Utils to make it consistent with file names
|
3 年之前 |
|
Adam Husar
|
a8e250d5ce
Support for examples in documentation, added links to example files to
|
3 年之前 |
|
Adam Husar
|
4a18687a54
Finalized documentation in sybsystem.yaml, the first pass of adding API
|
3 年之前 |
|
Adam Husar
|
564cd75615
Updated version counter
|
3 年之前 |
|
Adam Husar
|
d3da90ca9f
Using intersection of volume releases when both region and compartment
|
3 年之前 |
|
Adam Husar
|
a8ff2d6c1a
Support for BNGL observables with multiple patterns to be summed
|
3 年之前 |
|
Adam Husar
|
162a7a5194
Set model_language in exported data model to mcell4 from mcell3
|
3 年之前 |
|
Adam Husar
|
5b27d20aba
Allowed disconnected complexes in observables and in rxn rules
|
3 年之前 |
|
Adam Husar
|
28544edbc7
Improved doc in subsystem.yaml, not finished yet
|
3 年之前 |
|
Adam Husar
|
1f7b1789be
Added documentation to simulation_setup and submodules
|
3 年之前 |
|
Adam Husar
|
ef34d0b370
Incremented version number
|
3 年之前 |
|
Adam Husar
|
768fe3a31c
Not ignoring region when released molecule uses compartment when
|
3 年之前 |
|
Adam Husar
|
0481d8963c
Improved error messages related to partition size
|
3 年之前 |
|
Adam Husar
|
a957a4ae51
Added partition::schedulable_molecule_ids for molecule ids
|
3 年之前 |
|
Adam Husar
|
fb61a3b188
Added Molecule flag MOLECULE_FLAG_NO_NEED_TO_SCHEDULE and using it in
|
3 年之前 |
|
Adam Husar
|
f59d8e64f9
Improved documentation in model.yaml and observables.yaml
|
3 年之前 |
|
Adam Husar
|
878b225c0c
Added support for setting variable rate for BNGL reactions and also for
|
3 年之前 |
