 Adam Husar
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e4a8671ffa
Including rxn_ooutput data also when export_viz_data_model is called
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3 年之前 |
|
Adam Husar
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
|
Adam Husar
|
70f8d5c4ae
Caching of next barrier time in Calendar
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3 年之前 |
|
Adam Husar
|
af9b27b795
Replaced all uses of float_t with double
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3 年之前 |
|
Adam Husar
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72694586b0
Atttempt to replace float_T with pos, however unsuccesful (no difference
|
3 年之前 |
|
Adam Husar
|
f096510f8b
Fixed issue with iteration time floating point imprecision
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3 年之前 |
|
Adam Husar
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384b98b707
Support for asynchronous calls to Model.schedule_checkpoint e.g. from a
|
3 年之前 |
|
Adam Husar
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2b57ec39ee
Added support for synchronous checkpoint scheduling, asunchronous
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3 年之前 |
|
Adam Husar
|
238c1f5480
Using initial_iteration and initial_time from checkpoint
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3 年之前 |
|
Adam Husar
|
63b4646179
Added implementations of print_periodic_stats to give statistics on how
|
4 年之前 |
|
Adam Husar
|
e2f2b918fc
Added support for immediate releases through Model.release_molecules
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4 年之前 |
|
Adam Husar
|
d60ad5bf9d
Added computation of object volume for exported BNGL
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4 年之前 |
|
Adam Husar
|
43914c129f
Fixed rate export and added support for seed species release for bngl
|
4 年之前 |
|
Adam Husar
|
c151a00695
Added support for caching of species pattern matching in
|
4 年之前 |
|
Adam Husar
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8ebbfc0aae
Added support for diffuse&react event with longer timestep and the
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4 年之前 |
|
Adam Husar
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c1aba3c08f
Conversion of viz output name list to datamodel
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4 年之前 |
|
Adam Husar
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46fad0ab73
Initial support for release event conversion to datamodel
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4 年之前 |
|
Adam Husar
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737be4a8ad
Unified virtual overrides for events and added whole scheduler dump
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4 年之前 |
 ahusar
|
1d3db02af0
Unified simulation so that last iteration terminates after viz output
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4 年之前 |
 ahusar
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3acf1a9b56
Extended World class with run_n_iterations, removed end_simulation event
|
5 年之前 |
|
ahusar
|
eeee0e5c20
Improved iteration counting, first successful pymcell3_4 simulation.
|
5 年之前 |
|
ahusar
|
d5f89b220e
Finalized refactoring
|
5 年之前 |
|
ahusar
|
a9b23a0ce4
Part of major renaming according to Halide coding style
|
5 年之前 |
|
ahusar
|
99e11b962e
Base support for surface molecules and theirs rxns. Major cleanup.
|
5 年之前 |
|
Adam Husar
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767b420472
Added support for unimolecular reactions
|
5 年之前 |
|
Adam Husar
|
24393144e1
Replaced tabs with spaces
|
5 年之前 |
|
Adam Husar
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6a1d6fbb9c
Refactored and cleaned up code
|
5 年之前 |
|
Adam Husar
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8532a66165
Changed internal unit to the same as in MCell3
|
5 年之前 |
|
Adam Husar
|
78fe9df322
Finished initial version of release and diffuse&react events, started
|
5 年之前 |
|
Adam Husar
|
5ff1dbd4a0
Fixed copyright notice
|
5 年之前 |
