 Adam Husar
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0a71982a69
Fixed assert in react_unimol_single_molecule and diffuse_single_molecule
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3 年之前 |
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Adam Husar
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443c3e656c
Added support for cancellation of reaction in a callback
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3 年之前 |
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Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
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Adam Husar
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bd2f639e7f
Not reading molecule again in get_max_time, diffuse_vol_molecule and
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3 年之前 |
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Adam Husar
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4f40600ef9
Cleaned up TODOs and refactored code
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3 年之前 |
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Adam Husar
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9bc7b8f86b
Moves species_id_t and other typedefs into the BNG namespace
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3 年之前 |
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Adam Husar
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af9b27b795
Replaced all uses of float_t with double
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3 年之前 |
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Adam Husar
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d90f83d977
Merge remote-tracking branch 'origin/mcell4_dev' into mcell4_pos_float
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3 年之前 |
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Adam Husar
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9ad3235cad
Fixed support for absorptive surface classes for surf mols
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3 年之前 |
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Adam Husar
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0003915c31
Prepared diffuse and react event for configurable pos_t, renamed
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3 年之前 |
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Adam Husar
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e5d4538082
Preparation for surface mol+surface class rxns
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3 年之前 |
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Adam Husar
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84a0ea8acd
Fixed handlign of orientation for vol+surf class rxns, preparation for
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3 年之前 |
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Adam Husar
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c25d773f0d
Fixed time when a new molecule is created in case when a tranparent
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3 年之前 |
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Adam Husar
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19623d2047
Added support for updating compartment when crossing transparent walls
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3 年之前 |
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Adam Husar
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1471141fc3
Added support for creating products where compartment of the reactant
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3 年之前 |
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Adam Husar
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6455a68497
Handling of intermembrane surf-surf reactions with compartments that
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3 年之前 |
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Adam Husar
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c15a148323
Model.run_reaction now returns list of product ids
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3 年之前 |
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Adam Husar
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d12592732c
Added method.run_reaction, for now limited to unimol rxns
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3 年之前 |
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Adam Husar
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ad1a512381
Rxn callback is not called after reaction is processed and return
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3 年之前 |
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Adam Husar
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e262948d5e
Preparation for intermembrane surf-surf reactions
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3 年之前 |
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Adam Husar
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ebc884b31e
Added barrier event ot serve as a diffusion barrier for
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4 年之前 |
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Adam Husar
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803107f9ff
Checking that a moleculek is not schduled for this iteration, fixed
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4 年之前 |
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Adam Husar
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e2f2b918fc
Added support for immediate releases through Model.release_molecules
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4 年之前 |
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Adam Husar
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867b7db545
Added support for reporting of possition the second surface reactant in
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4 年之前 |
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Adam Husar
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51ebf71a8f
Partial improvement of custom time step support, not working correctly
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4 年之前 |
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Adam Husar
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7dd917921e
Removed invalid update of max_time in compute_vol_displacement
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4 年之前 |
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Adam Husar
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e65affd0e7
Added safe_diffusion_step but something broke and displacement is 0.1 of
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4 年之前 |
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Adam Husar
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5e55fcce29
Partial preparation for gradual increase of timestep
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4 年之前 |
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Adam Husar
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a031f409dc
Fixed time barrier computation in scheduler
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4 年之前 |
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Adam Husar
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c251c4e74e
Partially fixed support for custom timestep < 1, tests mdl/0400, 0401
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4 年之前 |
