 Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
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Adam Husar
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e44e133dbc
Tentative event to randomly shuffle order pf molecule simulation
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3 年之前 |
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Adam Husar
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af9b27b795
Replaced all uses of float_t with double
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3 年之前 |
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Adam Husar
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2b57ec39ee
Added support for synchronous checkpoint scheduling, asunchronous
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3 年之前 |
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Adam Husar
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95842d7788
Renamed PeriodicCallEvent to EndIterationCallEvent
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3 年之前 |
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Adam Husar
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834da64c2a
Added parition shrink event and shinking diverse sets to free memory
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4 年之前 |
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Adam Husar
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ebc884b31e
Added barrier event ot serve as a diffusion barrier for
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4 年之前 |
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Adam Husar
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1f1c9ca947
Renamed concentration clamp to clamp where applicable
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4 年之前 |
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Adam Husar
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eb3aa07b8b
Preparation for concentration clamp support
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4 年之前 |
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Adam Husar
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a031f409dc
Fixed time barrier computation in scheduler
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4 年之前 |
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Adam Husar
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1fdfb589e5
Changed DiffuseAndReactEvent::current_time_step to
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4 年之前 |
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Adam Husar
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926bd05b0f
Added Species cleanup event, all mcell4 tests pass, bngl tests fail
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4 年之前 |
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Adam Husar
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4ac6324489
Added dummy event used to check whether simulation should end
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4 年之前 |
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Adam Husar
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353d761329
Initial code for RxnClassCleanupEvent
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4 年之前 |
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Adam Husar
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c151a00695
Added support for caching of species pattern matching in
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4 年之前 |
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Adam Husar
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8ebbfc0aae
Added support for diffuse&react event with longer timestep and the
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4 年之前 |
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Adam Husar
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0ebbeb8652
Tentative implementation of sorting of mols by subpart
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4 年之前 |
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Adam Husar
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31e973db8a
Reworked release event so that scheduling of release patterns is
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4 年之前 |
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Adam Husar
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d2ce664d39
Support for custom periodicity in BaseEvent
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4 年之前 |
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Adam Husar
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21370650cd
Added catching of ctrl-c in pymcell4, it was ignored before
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4 年之前 |
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Adam Husar
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46fad0ab73
Initial support for release event conversion to datamodel
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4 年之前 |
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Adam Husar
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737be4a8ad
Unified virtual overrides for events and added whole scheduler dump
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4 年之前 |
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Adam Husar
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28d7a5c330
Added secondary ordering of release events according to actual release
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4 年之前 |
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Adam Husar
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270bad638d
Initial vol mol counting support including conversion from mcell3
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4 年之前 |
 ahusar
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3acf1a9b56
Extended World class with run_n_iterations, removed end_simulation event
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5 年之前 |
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ahusar
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a9b23a0ce4
Part of major renaming according to Halide coding style
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5 年之前 |
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ahusar
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99e11b962e
Base support for surface molecules and theirs rxns. Major cleanup.
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5 年之前 |
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Adam Husar
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24393144e1
Replaced tabs with spaces
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5 年之前 |
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Adam Husar
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6a1d6fbb9c
Refactored and cleaned up code
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5 年之前 |
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Adam Husar
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8c43d84f96
Defragmentation passes tests
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5 年之前 |
