 Adam Husar
|
6a1734924c
Support for default VizOutput and Count directory
|
3 年之前 |
|
Adam Husar
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
Adam Husar
|
af9b27b795
Replaced all uses of float_t with double
|
3 年之前 |
|
Adam Husar
|
23adc99547
Moved convert_cplx* and convert_elementary_molecule_type as static
|
3 年之前 |
|
Adam Husar
|
6bfa479d0c
Parsing BNGL name directly in Complex ctor independently on subsystem
|
3 年之前 |
|
Adam Husar
|
7c3085f28d
Set of changes towards build with MSVC
|
3 年之前 |
|
Adam Husar
|
bd2928f2b4
Exporting molecules into simulation_state.py
|
3 年之前 |
|
Adam Husar
|
eb328e72cf
Added BaseExportClass to define export interface and polished subsystem
|
3 年之前 |
|
Adam Husar
|
8a318a7a6d
Skipping ALL_*MOLECULES species superclasses for python export, added
|
3 年之前 |
|
Adam Husar
|
ed615e3642
Removed unnecessary enable_shared_from_this from Subsystem
|
3 年之前 |
|
Adam Husar
|
512eacd189
Renamed InstantiationData to Instantiation
|
4 年之前 |
|
Adam Husar
|
e126dd0187
Unified BNG naming with API by renaming MolType to ElemMolType,
|
4 年之前 |
|
Adam Husar
|
22172f9565
Renamed API ComponentInstance to Component, ElementaryMoleculeInstance
|
4 年之前 |
|
Adam Husar
|
dcae0e4fee
Intermediate commit towards comparison while adding rxn rules
|
4 年之前 |
|
Adam Husar
|
a4953de580
Fixed error and warnign messages for
|
4 年之前 |
|
Adam Husar
|
a4a923ba9d
Checking that simple species addition is either ignored if the same or
|
4 年之前 |
|
Adam Husar
|
306a69419a
Rename API::ComplexInstance to API::Complex
|
4 年之前 |
|
Adam Husar
|
9d794f4c6c
Renamed BNG::CplxInstance to Cplx and removed all related uses of 'inst'
|
4 年之前 |
|
Adam Husar
|
97094b975e
Reorganization and fixes of reaction name handling
|
4 年之前 |
|
Adam Husar
|
9892faaa52
Added support for releases of surface molecules read from BNGL seed
|
4 年之前 |
|
Adam Husar
|
a681f40172
Added support for overriding BNG parameters from MCell4 model
|
4 年之前 |
|
Adam Husar
|
283eb43991
Changed all occurences of 'filename' in API to 'file_name'
|
4 年之前 |
|
Adam Husar
|
6f6f5199a3
Added API method Model.load_bngl
|
4 年之前 |
|
Adam Husar
|
a0f90abeeb
Added method Observables::load_bngl_observables - not tested yet,
|
4 年之前 |
|
Adam Husar
|
a2c4450153
Cleane most of the compilation warnings on MacOS
|
4 年之前 |
|
Adam Husar
|
7f9a3096bb
Interm. commit - almost done InstantiationData::load_bngl_seed_species
|
4 年之前 |
|
Adam Husar
|
c89e2309a8
Initial support for bngl parsing in API, conversion from API to MCell4
|
4 年之前 |
|
Adam Husar
|
44f0f9ff74
Added implemetation to find_* methods of subsystem and inst data
|
4 年之前 |
|
Adam Husar
|
8fadf41e27
Added skeleton implementation of SurfaceClass to the pymcell4 API
|
4 年之前 |
|
Adam Husar
|
94acf2869a
Added conversion of species and viz outputs from Pymcell4 to Mcell4
|
4 年之前 |
