 Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
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Adam Husar
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c6ed8097ca
Removed 'clone' methods that are not needed anymore due to generated
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3 年之前 |
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Adam Husar
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8aacc216e8
Added argument all_details to generated __str__ method to produce
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3 年之前 |
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Adam Husar
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e70edb861b
Fixed conversion of complexes from BNG to API and back for complexes
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3 年之前 |
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Adam Husar
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068de1970b
Fixed compartment check in Species, allowing compartments now
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3 年之前 |
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Adam Husar
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032fdadd02
Initial support for compartments for elementary molecules in API
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3 年之前 |
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Adam Husar
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6bfa479d0c
Parsing BNGL name directly in Complex ctor independently on subsystem
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3 年之前 |
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Adam Husar
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7c3085f28d
Set of changes towards build with MSVC
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3 年之前 |
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Adam Husar
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d7c4a920ab
Merge remote-tracking branch 'origin/mcell4_checkpointing2' into
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3 年之前 |
 Adam
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585362e41c
Initial set of changed for Windows build
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3 年之前 |
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Adam Husar
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a0f7456d72
Added CountTerm.initial_reactions_count to be able to checkpoint number
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3 年之前 |
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Adam Husar
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fc7965d553
Fixed handling of flags inherited from species to el. molecule types
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3 年之前 |
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Adam Husar
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eb328e72cf
Added BaseExportClass to define export interface and polished subsystem
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3 年之前 |
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Adam Husar
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8a318a7a6d
Skipping ALL_*MOLECULES species superclasses for python export, added
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3 年之前 |
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Adam Husar
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22172f9565
Renamed API ComponentInstance to Component, ElementaryMoleculeInstance
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4 年之前 |
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Adam Husar
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24a631af57
Finished printing of errors and warnings for cases when identical rxns
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4 年之前 |
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Adam Husar
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a4a923ba9d
Checking that simple species addition is either ignored if the same or
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4 年之前 |
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Adam Husar
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2d5679e6c6
Added __eq__ to all API classes and makde Complex use canonical form for
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4 年之前 |
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Adam Husar
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c6aebc455c
Initial support for export of molecule types to BNGL
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4 年之前 |
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Adam Husar
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eb5fc8339d
Finished support for compartments in rxns for python/bngl generation
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4 年之前 |
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Adam Husar
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306a69419a
Rename API::ComplexInstance to API::Complex
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4 年之前 |
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Adam Husar
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5725fd0bf8
Cehcking that simple species must not contain '.' in their name, fixed
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4 年之前 |
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Adam Husar
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6cf2eda9e8
Fixed semantic check in Species
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4 年之前 |
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Adam Husar
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3bd6bfca63
Descibed usages of the API::Species class, fixed semantic checks and
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4 年之前 |
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Adam Husar
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1054952833
Renamed ComplexInstance.bngl_string to name and updated gen.py to
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4 年之前 |
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Adam Husar
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429a3c97b4
Added ComplexInstance.as_species and fixed VizOutput.species_list
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4 年之前 |
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Adam Husar
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3ba532fae3
Fixed initialization of ComplxInstance when BNGL string is used
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4 年之前 |
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Adam Husar
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a5cc755630
Added initial support for custom time/space step to pymcell4
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4 年之前 |
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Adam Husar
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050a020d35
Fixed comparison of species when added to the species container
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4 年之前 |
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Adam Husar
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7f9a3096bb
Interm. commit - almost done InstantiationData::load_bngl_seed_species
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4 年之前 |
