 Adam Husar
|
443c3e656c
Added support for cancellation of reaction in a callback
|
3 年之前 |
|
Adam Husar
|
d713648259
Added API method Model.get_paired_molecules
|
3 年之前 |
|
Adam Husar
|
91fdcab3a0
Uppdating API geometry when walls were moved due to paired molecules
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3 年之前 |
|
Adam Husar
|
812f085949
Added support for for Model.pair_molecules, unpair_molecules, and
|
3 年之前 |
|
Adam Husar
|
03daf84885
Added default argument to Model.apply_vertex_moves to randomize order of
|
3 年之前 |
|
Adam Husar
|
e1d3b3e537
Fixed export_data_model_viz_or_full to export everything when
|
3 年之前 |
|
Adam Husar
|
fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
|
3 年之前 |
|
Adam Husar
|
301ad47426
Added argument to Model.dump_internal_state and regenerated
|
3 年之前 |
|
Adam Husar
|
13d802eacd
Moved BNGL export code to a separate file
|
3 年之前 |
|
Adam Husar
|
ccee2366bd
Prepared counts for support of .gdat output format
|
3 年之前 |
|
Adam Husar
|
f3562f98f0
Updating API side vertex coordinates after a cell to apply_vertex_moves
|
3 年之前 |
|
Adam Husar
|
491e29447f
Added support for registering multiple wall hit callbacks
|
3 年之前 |
|
Adam Husar
|
1f8008051a
Fixed generation of Model.__str__
|
3 年之前 |
|
Adam Husar
|
8aacc216e8
Added argument all_details to generated __str__ method to produce
|
3 年之前 |
|
Adam Husar
|
e53f1604fd
Added support for shallow copy of API objects
|
3 年之前 |
|
Adam Husar
|
c4efef42fd
Added option to Model.export_to_bngl to set simulation method
|
3 年之前 |
|
Adam Husar
|
f96e0067bc
Initial implementation of export_geometry to OBJ file format, name
|
3 年之前 |
|
Adam Husar
|
9bc7b8f86b
Moves species_id_t and other typedefs into the BNG namespace
|
3 年之前 |
|
Adam Husar
|
af9b27b795
Replaced all uses of float_t with double
|
3 年之前 |
|
Adam Husar
|
f59d8e64f9
Improved documentation in model.yaml and observables.yaml
|
3 年之前 |
|
Adam Husar
|
29176f08f0
Added configuration Warnings.high_reaction_probability, started working
|
3 年之前 |
|
Adam Husar
|
bb06fa93c1
Renamed .inc files to a more common extension .inl
|
3 年之前 |
|
Adam Husar
|
74bb56582e
Removed previous compartments support, MDL tests pass but
|
3 年之前 |
|
Adam Husar
|
029e6e314f
Added copyright information to be printed on model initialization.
|
3 年之前 |
|
Adam Husar
|
d415147165
Changed all input API Vec3 arguments to use List[float]
|
3 年之前 |
|
Adam Husar
|
37210544dc
Removed argument subsystem from load_bngl_seed_species and
|
3 年之前 |
|
Adam Husar
|
9f99f8920f
Reorganized checkpoint signal handling because the original
|
3 年之前 |
|
Adam Husar
|
6772be3051
Added export of schedule checkpoints, using FINISHED as marker telling
|
3 年之前 |
|
Adam Husar
|
a233e9e8e0
Added submodule run_utils with methods get_last_checkpoint_dir and
|
3 年之前 |
|
Adam Husar
|
4c63d43057
Added handling of checkpointing signals
|
3 年之前 |
