 Adam Husar
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f43346035e
Unified naming of 'rxn', all previous variants that used just 'rx' were
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3 年之前 |
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Adam Husar
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1faf2eebaf
Moved initialization of surface regions into model
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3 年之前 |
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Adam Husar
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88dd542825
Added check that overlapped object cannot be a BNGL compartment
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3 年之前 |
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Adam Husar
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57001604ab
Added option Notifications.wall_overlap_report
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3 年之前 |
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Adam Husar
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10a676cae3
Setting of flag GeometryObject::is_fully_transparent for overlapping
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3 年之前 |
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Adam Husar
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7303f8eae8
New approach to overlapped walls that requires one object to be fully
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3 年之前 |
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Adam Husar
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eae7027b28
Replaced Partition::finalize_wall_creation with finalize_walls, removed
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3 年之前 |
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Adam Husar
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465591e435
Renamed Wall::precompute_wall_constants and reinit_edge_constants
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3 年之前 |
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Adam Husar
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f4e5654837
Preparation for wall overlap support
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3 年之前 |
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Adam Husar
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b0b12dc6d7
Using MCell4 walls overlap check with mcell -mcell4
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3 年之前 |
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Adam Husar
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6a1734924c
Support for default VizOutput and Count directory
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3 年之前 |
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Adam Husar
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4504c4f2c8
Added support for release probability
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3 年之前 |
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Adam Husar
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91eac53522
Added support for warning option molecule_placement_failure
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3 年之前 |
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Adam Husar
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e35bae5d3b
Added option config.use_bn_units
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3 年之前 |
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Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
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Adam Husar
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bd9d88f6ef
Added option Notifications.iteration_report
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3 年之前 |
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Adam Husar
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e6c4318574
Added checks for too high number of molecules to be released.
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3 年之前 |
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Adam Husar
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365c2788bb
Added support for gdat file format output, exports to other formats are
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3 年之前 |
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Adam Husar
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ccee2366bd
Prepared counts for support of .gdat output format
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3 年之前 |
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Adam Husar
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85d001e55c
Replaced region and geometry pobject id in MolOrRxnCountTerm with region
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3 年之前 |
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Adam Husar
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abd68b8124
Split type LEAF of RegionExprNode into LEAF_SURFACE_REGION and
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3 年之前 |
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Adam Husar
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4fd89cf948
Created a new class RegionExpr based on previous implementation in
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3 年之前 |
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Adam Husar
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344e1b3896
Added warning about unused region in CountTerm and error when a
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3 年之前 |
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Adam Husar
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4dc7ac4ec7
Count.count_expression simplification and refactor
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3 年之前 |
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Adam Husar
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afc39661a5
Added API config option molecules_order_random_shuffle_periodicity
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3 年之前 |
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Adam Husar
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e41133b50f
Renamed subpartition -> subpart
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3 年之前 |
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Adam Husar
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44a7f04db5
An other set of refactors and TODO fixes
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3 年之前 |
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Adam Husar
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4f40600ef9
Cleaned up TODOs and refactored code
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3 年之前 |
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Adam Husar
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637bd5640c
Support for counting of missed rxns, renamed FLT_GIGANTIC to
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3 年之前 |
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Adam Husar
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7a2c9cb563
Fixed handling of case when rxn ALL_MOLECULES + surf_class -> 0 was not
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3 年之前 |
