 Bob Kuczewski
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61b577ccd9
Added code to map graph pattern entries into table indexes
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6 年之前 |
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Bob Kuczewski
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a2a54eb01f
Removed trailing comma from molecule instance list in JSON Output
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6 年之前 |
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Bob Kuczewski
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23d2a03092
Added a command line option to control the generation of proxy molecules
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6 年之前 |
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Bob Kuczewski
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aea1b2506f
Added a "VIZ_PROXY_OUTPUT" flag now required to get the proxy locations.
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6 年之前 |
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Bob Kuczewski
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3979499b92
Removed some of the commented code from viz_output.c
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6 年之前 |
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Bob Kuczewski
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bc4d4a4753
Changed single quotes to double quotes for JSON compatibility.
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6 年之前 |
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Bob Kuczewski
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e5e9f68e96
Added JSON List Viz Output format (mcell -z 0x23 -d 10)
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6 年之前 |
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Bob Kuczewski
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79a2dc47aa
Properly handle non-spatial binding between non-spatial molecules.
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6 年之前 |
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Bob Kuczewski
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d6632e86f9
Export text versions of the viz molecule header and viz molecule list.
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6 年之前 |
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Bob Kuczewski
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ce1e35b0ef
Write the file type (now 2) to the BNGL viz files.
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6 年之前 |
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Bob Kuczewski
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c6579334a0
Removed the space_struct_dict_file variable and references.
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6 年之前 |
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Bob Kuczewski
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c6b55c059f
Use viz_bngl path and Scene.bnglviz, commented unused functions.
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6 年之前 |
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Bob Kuczewski
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bb0de197d7
Shifted the new file format option to the second LSN (nibble).
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6 年之前 |
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Bob Kuczewski
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9ed84b937b
Added support for several new component display modes.
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6 年之前 |
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Bob Kuczewski
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5a1f05817c
Added ability to show components as "mol_component" molecules.
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6 年之前 |
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Bob Kuczewski
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5ad770f922
Added code to create a spatial subdirectory in viz_data/seed_#
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6 年之前 |
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Bob Kuczewski
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6672908872
Added a command line option for alternate viz output formats -z #
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6 年之前 |
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Bob Kuczewski
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6872ab57be
Merge branch 'master' of https://github.com/mcellteam/mcell into development
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6 年之前 |
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Bob Kuczewski
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402bd557cb
Merge branch 'development' of https://github.com/mcellteam/mcell into spatially_structured_mol_viz
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6 年之前 |
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Bob Kuczewski
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6bf3153aa9
Commented out debug printing in spatial mol viz.
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6 年之前 |
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Bob Kuczewski
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1afb2a3206
Added a command line option of -b # (or --bond_angle #) for bond angles
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6 年之前 |
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Bob Kuczewski
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a73067f01e
Rotation keys implemented with a forced bond angle of 0.2+0.2 radians.
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6 年之前 |
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Bob Kuczewski
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13100274bf
Added rotation keys to the structures and fill from rotation axis.
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6 年之前 |
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Bob Kuczewski
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de514161cd
Added 3D Structure to Mol-Viz output for MCellR runs (without rotation).
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6 年之前 |
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Bob Kuczewski
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09ba9ccc83
Added flags for 2D and 3D molecules (with and without rotation).
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6 年之前 |
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Bob Kuczewski
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bb89a38d5d
Spatial Molecules: Added comments and renamed a variable for clarity.
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6 年之前 |
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Bob Kuczewski
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860cfc329f
Trivial changes: Added "XYZRef" and some print statements.
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6 年之前 |
 Tom Bartol
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49a8556700
Make mdlr2mdl.py and mcell3r.py more robust in setting the library path environment variables
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6 年之前 |
 Tom Bartol
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a008e2dbf4
Reverse changes made in commit 916da8a4416efb1ebc209f449e2a7203182ffc65
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6 年之前 |
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Bob Kuczewski
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68e5fee215
Added full support for -d (dump) option in MCell
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6 年之前 |
