 dittrich
|
c9b21399e8
Added a short document (latex source + pdf) describing the derivation
|
15 年之前 |
|
dittrich
|
8d40ef13c5
Slightly reworded the description of CUSTOM_SPACE_STEP in the QRG
|
15 年之前 |
|
dittrich
|
085cc3a2f4
This commit fixes several bugs in the way we convert user defined space steps
|
15 年之前 |
 Jed Wing
|
be3406030c
Added error checking w.r.t. the viz state value in the parser.
|
15 年之前 |
|
Jed Wing
|
2368b74ffb
For VIZ_OUTPUT blocks (not VIZ_DATA_OUTPUT blocks), absorbed STATE_VALUES into NAME_LIST.
|
15 年之前 |
|
Jed Wing
|
2eac82beb2
If a state value is provided for a molecule, we will no longer override it with INCLUDE_OBJ if it is re-specified.
|
15 年之前 |
|
Jed Wing
|
d11880a111
Merged from trunk.
|
15 年之前 |
 Jed Wing
|
4977d964bf
Merged changes from Boris.
|
15 年之前 |
|
Jed Wing
|
7926320a7b
Fix for odd behavior if MESHES are included in ASCII-mode output.
|
15 年之前 |
|
Jed Wing
|
4f5cc206e1
Copying across a minor bugfix which I added to outcome_products after it was
|
15 年之前 |
 Boris Kaminsky
|
3c76c1353b
Fixed bug in the function 'mol_timestep_def() (thanks Markus for the discovery). Cleaned up functions 'outcome_products_random()' and 'react_2D_all_neighbors().
|
15 年之前 |
|
Boris Kaminsky
|
890fe9e473
Fixed bug in the function 'mol_timestet_def()' (thanks Markus for pointing). Cleaned functions 'outcome_products_random()' and 'react_2D_all_neighbors()'.
|
15 年之前 |
|
Jed Wing
|
6c94446ff9
Adding macromolecules documentation.
|
15 年之前 |
|
Jed Wing
|
387eac88a2
Removing old outcome_products.
|
15 年之前 |
|
Boris Kaminsky
|
41dd23faf6
Improved function 'outcome_products_random()' for the case of one surface product. Now we do not use a random number if we need to replace one of the reactants that speeds up the simulation.
|
15 年之前 |
|
Boris Kaminsky
|
5ebe8ea955
Improved function 'outcome_products_random()' for the case of one surface product. Now we do not use a random number if we need to replace one of the reactants that speeds up the simulation.
|
15 年之前 |
|
Boris Kaminsky
|
c9b4283709
Fixed a bug discovered by Tom in the function 'outcome_products_random()'. The bug results in the incorrect settting of the product flag for the reaction type A + B -> A + C. As a result C was not replacing A but trying to place itself on the randomly selected tile.
|
15 年之前 |
|
Boris Kaminsky
|
8a8b913c3e
Fixed a bug in the function 'outcome_products_random()'.
|
15 年之前 |
|
Boris Kaminsky
|
d6ff0cb81c
Merged with trunk
|
15 年之前 |
|
Boris Kaminsky
|
68a53643d5
Changed copyright date in the function 'print_credits()'.
|
15 年之前 |
|
Boris Kaminsky
|
0b32df11b0
Changed copyright date in the function 'print_credits().
|
15 年之前 |
|
Boris Kaminsky
|
22a469e03d
Merged with the main trunk.
|
15 年之前 |
|
Boris Kaminsky
|
d0bb4731ff
Merged with the main trunk.
|
15 年之前 |
|
Jed Wing
|
a8a42077b9
Fix for the -e option to main.py: tests should now be properly excluded.
|
15 年之前 |
|
Jed Wing
|
adfeb5e318
Merging my bugfixes into Boris' new surface molecules code.
|
15 年之前 |
|
Boris Kaminsky
|
0f3681d6bb
Implemented revised model of the reaction between two surface molecules. Reaction probability is now calculated dynamically based on the number of tile neighbors that are connected by common edge or vertex. The reaction products are selected randomly to replace reactants (if needed) and products are placed on the randomly selected tiles.
|
15 年之前 |
|
Boris Kaminsky
|
7fa5a8f376
Fixed bug in the function 'outcome_products_random()'.
|
15 年之前 |
|
Boris Kaminsky
|
a92bd839ee
Made improvements to the functions 'react_2D_all_neighbors()', 'test_many_bimolecular_all_neighbors()'.
|
15 年之前 |
|
Jed Wing
|
2bdecdeeb4
Made the error reporting for "out-of-memory" cases more consistent.
|
15 年之前 |
|
Boris Kaminsky
|
551666cfba
Merged with trunk
|
15 年之前 |
