 Bob Kuczewski
|
769b892fbd
Removed print statements used during debugging. This version works.
|
7 年之前 |
|
Bob Kuczewski
|
e878510a3c
Added code to free the structures allocated for viz output.
|
7 年之前 |
|
Bob Kuczewski
|
1f07fcc2f0
Removed the new_ext_mol_viz() function to make malloc's more visible.
|
7 年之前 |
|
Bob Kuczewski
|
fd1ee5a2cf
Merge branch 'nfsim_diffusion' of https://github.com/mcellteam/mcell into nfsim_diffusion
|
7 年之前 |
|
Bob Kuczewski
|
0dfcc59e9e
Initial version of BNGL viz output - Needs lots of cleanup / freeing.
|
7 年之前 |
|
Bob Kuczewski
|
327c6648b2
Initial version of BNGL viz output - Needs lots of cleanup / freeing.
|
7 年之前 |
|
Bob Kuczewski
|
d11600fc0c
Printed out graph_pattern for molecules during visualization output.
|
7 年之前 |
 Jose Juan Tapia
|
352603e134
cleaning up some memory allocation problems
|
8 年之前 |
|
Jose Juan Tapia
|
88e3e86f0c
correcting typo on reaction check
|
8 年之前 |
|
Jose Juan Tapia
|
d8bc45cbd7
adding resampling considerations
|
8 年之前 |
|
Jose Juan Tapia
|
9f2e1e8285
bugfix: unimolecular reactions were getting thrown out
|
8 年之前 |
|
Jose Juan Tapia
|
3f041077e1
optimizing call to preliminary check
|
8 年之前 |
|
Jose Juan Tapia
|
8f03606a79
closing a memory leak. clealing up nfsim function interfaces
|
8 年之前 |
|
Jose Juan Tapia
|
efdb8abe7e
calling libnfsim shutdown method
|
8 年之前 |
|
Jose Juan Tapia
|
a6c40e813e
fixing memory leaks
|
8 年之前 |
|
Jose Juan Tapia
|
8debf99967
adding reaction logging
|
8 年之前 |
|
Jose Juan Tapia
|
0b99f8f0e3
improving nfsim output information from mcell
|
8 年之前 |
|
Jose Juan Tapia
|
4121fc5e56
adding some nfsim output information to the mcell console output
|
8 年之前 |
|
Jose Juan Tapia
|
e4acf4999f
calculation of species->flags for CAN_XXXYYY (surf,vol) is now on nfsim
|
8 年之前 |
|
Jose Juan Tapia
|
ac9f13ea20
bugfix on struct_rx initialization in react_trig_nfsim
|
8 年之前 |
|
Jose Juan Tapia
|
f994461a79
adding missing file
|
8 年之前 |
|
Jose Juan Tapia
|
10ba47b009
changing to the new viersion of the nfsim api
|
8 年之前 |
|
Jose Juan Tapia
|
53688b54e5
changing the function pointers for get_xxxx(diffuison,space step etc) to be more efficient when nfsim is providing no information
|
8 年之前 |
|
Jose Juan Tapia
|
6fb7339abb
manually merging some files
|
8 年之前 |
|
Jose Juan Tapia
|
2dd196263d
removing superfluos commands
|
8 年之前 |
|
Jose Juan Tapia
|
16ba03502c
bugfix: product orientation
|
8 年之前 |
|
Jose Juan Tapia
|
0f43daffbc
bugfix: rx->geometry array was getting lost
|
8 年之前 |
|
Jose Juan Tapia
|
5f42a59008
refactoring nfsim reactant orientation calculation to a separate function
|
8 年之前 |
|
Jose Juan Tapia
|
c0748f85b7
adding back species parameter to count_region_...
|
8 年之前 |
|
Jose Juan Tapia
|
15a9ce1315
changes to how space/time_step is accessed from around mcell
|
8 年之前 |
