 Adam Husar
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ddfa77396e
Finalized section on BioNetGen Language Support
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3 年之前 |
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Adam Husar
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9bc7b8f86b
Moves species_id_t and other typedefs into the BNG namespace
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3 年之前 |
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Adam Husar
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6fba5a4197
Fixed documentation for Config.vacancy_search_distance, minor code
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3 年之前 |
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Adam Husar
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0b53e743ca
Added a new section on BNGL into documentation
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3 年之前 |
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Adam Husar
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2b7c83270c
Removed support for product "Null" that is not supported by BNG2.pl
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3 年之前 |
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Adam Husar
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c9b75ec5b6
Added support for new visualization binary format v2
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3 年之前 |
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Adam Husar
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9c70ade1da
Added automatic conversions of python tuples to vectors
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3 年之前 |
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Adam Husar
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af9b27b795
Replaced all uses of float_t with double
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3 年之前 |
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Adam Husar
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de736e08a0
Changes for subpart alignment and checking missed collisions
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3 年之前 |
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Adam Husar
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44ecc1272a
Handling collisions found in other subpartitions
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3 年之前 |
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Adam Husar
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1ec9bde4c2
Tentative alignment of subpart to a rounded float32 number
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3 年之前 |
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Adam Husar
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fe72cf290f
Removed unsuccesful attempt to fix wall collision detection
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3 年之前 |
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Adam Husar
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9f4a6a6134
First set of changes to issues where a molecule escapes enclosed object
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3 年之前 |
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Adam Husar
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90742568e7
Fixed move offset in Partition::move_waypoint_because_positioned_on_wall
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3 年之前 |
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Adam Husar
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f43e738860
Fixed issue in tiny_diffuse_3D where molecule position was replaced by
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3 年之前 |
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Adam Husar
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941f56cf31
Fixed compilation after merge with mcell4_dev
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3 年之前 |
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Adam Husar
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d90f83d977
Merge remote-tracking branch 'origin/mcell4_dev' into mcell4_pos_float
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3 年之前 |
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Adam Husar
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b1eafc9da2
Not generating rxns with surf classes into BNGL
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3 年之前 |
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Adam Husar
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dc560976c6
Incremented version
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3 年之前 |
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Adam Husar
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f2b6417d27
Added conversions of Warnings.high_reaction_probability,
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3 年之前 |
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Adam Husar
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9ad3235cad
Fixed support for absorptive surface classes for surf mols
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3 年之前 |
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Adam Husar
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6b5073a441
Fixed support for vol+surf class -> vol rxn
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3 年之前 |
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Adam Husar
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0c710cb824
Fixed subpartition tolerances
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3 年之前 |
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Adam Husar
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11cdbd4f85
Final set of changes towards configurable 32/64-bit pos_t, starting with
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3 年之前 |
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Adam Husar
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72c5c6e7e5
Using Partition.get_species instead of Partition.get_all_species.get
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3 年之前 |
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Adam Husar
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4ae82d7b2b
Minor partition class cleanup
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3 年之前 |
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Adam Husar
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a5144c7c98
7th set of changes towards configurable 32/64-bit pos_t
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3 年之前 |
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Adam Husar
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164a661861
6th set of changes towards configurable 32/64-bit pos_t
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3 年之前 |
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Adam Husar
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93a1e77a14
5th set of changes towards configurable 32/64-bit pos_t
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3 年之前 |
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Adam Husar
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cbf4c46f38
4th set of changes towards configurable 32/64-bit type pos_t
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3 年之前 |
