 Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
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Adam Husar
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410a24d5aa
Added support for model exports with GDAT output format
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3 年之前 |
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Adam Husar
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4dc7ac4ec7
Count.count_expression simplification and refactor
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3 年之前 |
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Adam Husar
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1c713789d9
Improved error message for empty surface class
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3 年之前 |
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Adam Husar
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5b056b55f4
Support for conversion of release sites into BNGL's seed species
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3 年之前 |
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Adam Husar
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d8263b6a85
Initial step towards rework of observables with compartments, test that
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3 年之前 |
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Adam Husar
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73e06d7e06
Generation of observables into BNGL
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4 年之前 |
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Adam Husar
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e680f56def
Reorganized generation of observables from data model to prepare for
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4 年之前 |
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Adam Husar
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4c5e82f2a3
Initial API support and generation for concentration clamps
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4 年之前 |
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Adam Husar
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d838be6b4d
Unified SurfaceProperty to use complex instead of species
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4 年之前 |
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Adam Husar
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e41dfb9478
Handling observables using compartments in python generator
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4 年之前 |
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Adam Husar
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eb5fc8339d
Finished support for compartments in rxns for python/bngl generation
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4 年之前 |
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Adam Husar
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d753978564
Base code for compartment generation from DM into BNGL and Python
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4 年之前 |
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Adam Husar
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2375034444
Distinguishing between Molecules and Species observables when generating
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4 年之前 |
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Adam Husar
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6040f6804e
Partial support for Python BNGL style reactions with orientations
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4 年之前 |
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Adam Husar
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b9465159d4
Handling of SurfaceClass.affected_species when species is BNGL string
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4 年之前 |
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Adam Husar
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5948e12a69
Generating reaction rule declarations for counts
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4 年之前 |
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Adam Husar
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c53ab58a5d
Moved counts generation into python generator, added struct
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4 年之前 |
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Adam Husar
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7492d1f482
Moved viz outputs generation to python generator
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4 年之前 |
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Adam Husar
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e4fc34b327
Added members 'bngl_species' to releases API, and generating it in
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4 年之前 |
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Adam Husar
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34710a8b38
Generating BNGL rxn names that will be needed in observables
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4 年之前 |
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Adam Husar
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782a4f0dfd
Support for generation of reactions into BNGL file
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4 年之前 |
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Adam Husar
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fc807cc61d
Moved reaction generation to PythonGenerator
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4 年之前 |
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Adam Husar
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2d2009164e
Moved generate_surface_classes to PythonGenerator
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4 年之前 |
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Adam Husar
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498af94656
Moved geometry generation into PythonGenerator
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4 年之前 |
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Adam Husar
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df142a0bce
Added support for generation of components and elementary molecule types
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4 年之前 |
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Adam Husar
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b79f87ba45
Preparation for generation of molecule types into BNGL file
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4 年之前 |
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Adam Husar
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a80ba916aa
Preparation for BNG generation in data model converter
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4 年之前 |
