 Adam Husar
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d3eb588875
Support for generation of description fields from DM into python&bngl
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3 年之前 |
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Adam Husar
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0e405e8f00
Added check for case when release quantity in data model is not set
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3 年之前 |
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Adam Husar
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2664a3bab9
Support for count region expression export to data model and from data
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3 年之前 |
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Adam Husar
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4504c4f2c8
Added support for release probability
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3 年之前 |
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Adam Husar
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97920e4001
Fixed parameter parsing ..-E.. was not handled correctly
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3 年之前 |
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Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
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Adam Husar
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410a24d5aa
Added support for model exports with GDAT output format
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3 年之前 |
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Adam Husar
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4dc7ac4ec7
Count.count_expression simplification and refactor
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3 年之前 |
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Adam Husar
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8be86237c4
Improved error message wehn rel sirte in data model does not have
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3 年之前 |
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Adam Husar
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768fe3a31c
Not ignoring region when released molecule uses compartment when
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3 年之前 |
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Adam Husar
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186365f6fa
Fixed conversion and compartment/orientation checks for rxns with surf
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3 年之前 |
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Adam Husar
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e16672e5eb
Added SurfacePropertyType.REACTIVE, fixed export of surf class without
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3 年之前 |
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Adam Husar
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1c713789d9
Improved error message for empty surface class
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3 年之前 |
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Adam Husar
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48e8a91060
Added support for division in MDLString counts,improved checks of counts
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3 年之前 |
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Adam Husar
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06bdbb701c
Overriding compartment if it does not match instead of error
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3 年之前 |
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Adam Husar
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d7e80b202d
Using prefixes for component and elementary mol types in python
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3 年之前 |
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Adam Husar
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57b7af72a0
Fixed handling of viz output-all iterations, it was ignored before
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3 年之前 |
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Adam Husar
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53cf22d2d7
Support for overridable parameters when generating model from data model
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3 年之前 |
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Adam Husar
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ebff8f662b
Initial support for functions in data model parameters, these functions
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3 年之前 |
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Adam Husar
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e41ee47c74
Added check for undefined parameters
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3 年之前 |
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Adam Husar
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5b056b55f4
Support for conversion of release sites into BNGL's seed species
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3 年之前 |
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Adam Husar
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d8263b6a85
Initial step towards rework of observables with compartments, test that
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3 年之前 |
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Adam Husar
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b9728e725e
Fixed case where data model -> pymcell4 conversion did not know that an
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3 年之前 |
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Adam Husar
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d415147165
Changed all input API Vec3 arguments to use List[float]
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3 年之前 |
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Adam Husar
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b47457fcd8
Fixed compilation of data_model_to_pymcell
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3 年之前 |
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Adam Husar
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d29e5ab71a
Addded check for duplicate IDs to previously missed geometry objects
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3 年之前 |
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Adam Husar
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aa26811328
Added check for duplicate names of generated objects, few related fixes
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3 年之前 |
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Adam Husar
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fb7a6fa370
Moved file generator_constants.h to
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3 年之前 |
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Adam Husar
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62cc5ed7fb
Removed VizOutput.all_species attribute
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4 年之前 |
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Adam Husar
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b970a27f18
Generating hooks for generated model customization and a customization
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4 年之前 |
