 Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
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Adam Husar
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44556b2659
Added extra imports to the customization template
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3 年之前 |
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Adam Husar
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b1eafc9da2
Not generating rxns with surf classes into BNGL
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3 年之前 |
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Adam Husar
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53cf22d2d7
Support for overridable parameters when generating model from data model
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3 年之前 |
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Adam Husar
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5b056b55f4
Support for conversion of release sites into BNGL's seed species
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3 年之前 |
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Adam Husar
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2a95d3d569
Removed option -c to force cellblender viz output from DM to MCell4 conv
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3 年之前 |
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Adam Husar
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b2da7aa829
Support for export of mcell4 scripting/customization from data model
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3 年之前 |
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Adam Husar
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1d7181001f
Extended data model to python generator to generate testing for
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3 年之前 |
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Adam Husar
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f29a7d1d51
Using different default periodicities for testing and normal runs for
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3 年之前 |
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Adam Husar
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b970a27f18
Generating hooks for generated model customization and a customization
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4 年之前 |
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Adam Husar
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73e06d7e06
Generation of observables into BNGL
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4 年之前 |
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Adam Husar
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e680f56def
Reorganized generation of observables from data model to prepare for
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4 年之前 |
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Adam Husar
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eb5fc8339d
Finished support for compartments in rxns for python/bngl generation
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4 年之前 |
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Adam Husar
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d753978564
Base code for compartment generation from DM into BNGL and Python
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4 年之前 |
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Adam Husar
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c53ab58a5d
Moved counts generation into python generator, added struct
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4 年之前 |
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Adam Husar
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7492d1f482
Moved viz outputs generation to python generator
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4 年之前 |
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Adam Husar
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e4fc34b327
Added members 'bngl_species' to releases API, and generating it in
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4 年之前 |
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Adam Husar
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34710a8b38
Generating BNGL rxn names that will be needed in observables
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4 年之前 |
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Adam Husar
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fc807cc61d
Moved reaction generation to PythonGenerator
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4 年之前 |
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Adam Husar
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2d2009164e
Moved generate_surface_classes to PythonGenerator
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4 年之前 |
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Adam Husar
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df142a0bce
Added support for generation of components and elementary molecule types
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4 年之前 |
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Adam Husar
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756bef6d94
Added support for BNGL parameter generation
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4 年之前 |
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Adam Husar
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a80ba916aa
Preparation for BNG generation in data model converter
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4 年之前 |
