 Tom Bartol
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3920aec22c
Fix preservation of reaction names during export of data model to bngl
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3 年之前 |
 Adam Husar
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635f23b26a
Added warning message to customization.py
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3 年之前 |
|
Adam Husar
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d3eb588875
Support for generation of description fields from DM into python&bngl
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3 年之前 |
|
Adam Husar
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0e405e8f00
Added check for case when release quantity in data model is not set
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3 年之前 |
|
Adam Husar
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91eac53522
Added support for warning option molecule_placement_failure
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3 年之前 |
|
Adam Husar
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73fed511a3
Support for handling of use_bng_units in data model
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3 年之前 |
|
Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
|
Adam Husar
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03a84bc4a6
Moved call to custom_config to be run after all components were added.
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3 年之前 |
|
Adam Husar
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410a24d5aa
Added support for model exports with GDAT output format
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3 年之前 |
|
Adam Husar
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4dc7ac4ec7
Count.count_expression simplification and refactor
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3 年之前 |
|
Adam Husar
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11667a9063
Fixed import of module parameters in template customization.py, moved
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3 年之前 |
|
Adam Husar
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44556b2659
Added extra imports to the customization template
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3 年之前 |
|
Adam Husar
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af9b27b795
Replaced all uses of float_t with double
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3 年之前 |
|
Adam Husar
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b1eafc9da2
Not generating rxns with surf classes into BNGL
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3 年之前 |
|
Adam Husar
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f2b6417d27
Added conversions of Warnings.high_reaction_probability,
|
3 年之前 |
|
Adam Husar
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f0a722d644
Renamed Instantiation.load_bngl_seed_species to
|
3 年之前 |
|
Adam Husar
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ded2f8adb2
Fixed export of internaction radius into data model and generation of
|
3 年之前 |
|
Adam Husar
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1c713789d9
Improved error message for empty surface class
|
3 年之前 |
|
Adam Husar
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48e8a91060
Added support for division in MDLString counts,improved checks of counts
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3 年之前 |
|
Adam Husar
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1b1fd5b5d3
Importing parameters module as from parameters import * in model.py
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3 年之前 |
|
Adam Husar
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6c01d9ae7e
Passing shared.parameter_overrides to BNGL load functions
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3 年之前 |
|
Adam Husar
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c439d23086
Improved customization template comment, importing module 'shared'
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3 年之前 |
|
Adam Husar
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53cf22d2d7
Support for overridable parameters when generating model from data model
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3 年之前 |
|
Adam Husar
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ebff8f662b
Initial support for functions in data model parameters, these functions
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3 年之前 |
|
Adam Husar
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5b056b55f4
Support for conversion of release sites into BNGL's seed species
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3 年之前 |
|
Adam Husar
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d8263b6a85
Initial step towards rework of observables with compartments, test that
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3 年之前 |
|
Adam Husar
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2a95d3d569
Removed option -c to force cellblender viz output from DM to MCell4 conv
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3 年之前 |
|
Adam Husar
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b2da7aa829
Support for export of mcell4 scripting/customization from data model
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3 年之前 |
|
Adam Husar
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37210544dc
Removed argument subsystem from load_bngl_seed_species and
|
3 年之前 |
|
Adam Husar
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b47457fcd8
Fixed compilation of data_model_to_pymcell
|
3 年之前 |
