 Adam Husar
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0e405e8f00
Added check for case when release quantity in data model is not set
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3 年之前 |
|
Adam Husar
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2664a3bab9
Support for count region expression export to data model and from data
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3 年之前 |
|
Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
|
Adam Husar
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48e8a91060
Added support for division in MDLString counts,improved checks of counts
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3 年之前 |
|
Adam Husar
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d6f9730520
Ignoring when version is not set
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3 年之前 |
|
Adam Husar
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ebff8f662b
Initial support for functions in data model parameters, these functions
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3 年之前 |
|
Adam Husar
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5b056b55f4
Support for conversion of release sites into BNGL's seed species
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3 年之前 |
|
Adam Husar
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d8263b6a85
Initial step towards rework of observables with compartments, test that
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3 年之前 |
|
Adam Husar
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b47457fcd8
Fixed compilation of data_model_to_pymcell
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3 年之前 |
|
Adam Husar
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aa26811328
Added check for duplicate names of generated objects, few related fixes
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3 年之前 |
|
Adam Husar
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908eded0b5
Build fixes after several changes for Windows compilation
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3 年之前 |
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Adam Husar
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f29a7d1d51
Using different default periodicities for testing and normal runs for
|
3 年之前 |
|
Adam Husar
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bd2928f2b4
Exporting molecules into simulation_state.py
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3 年之前 |
|
Adam Husar
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df118ee0bb
Added export of geometry and instantiation to python
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3 年之前 |
|
Adam Husar
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fb7a6fa370
Moved file generator_constants.h to
|
3 年之前 |
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Adam Husar
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89940aae32
Added empty implementation of Model.save_checkpoint with a call to
|
3 年之前 |
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Adam Husar
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88054f97f7
Export to python - handlign naming and exporting objects only once
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3 年之前 |
|
Adam Husar
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73e06d7e06
Generation of observables into BNGL
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4 年之前 |
|
Adam Husar
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e680f56def
Reorganized generation of observables from data model to prepare for
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4 年之前 |
|
Adam Husar
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1e98ed451a
Fixed conversions of params startin with '_' and also fixes in
|
4 年之前 |
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Adam Husar
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eb5fc8339d
Finished support for compartments in rxns for python/bngl generation
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4 年之前 |
|
Adam Husar
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9d794f4c6c
Renamed BNG::CplxInstance to Cplx and removed all related uses of 'inst'
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4 年之前 |
|
Adam Husar
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82d3abe017
Unified complex instance or species generation
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4 年之前 |
|
Adam Husar
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97094b975e
Reorganization and fixes of reaction name handling
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4 年之前 |
|
Adam Husar
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1221f4bec4
Replacing special charactes in ids with id-compatible strings
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4 年之前 |
|
Adam Husar
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7b20ea74d5
Handling C comments in count MDL strings
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4 年之前 |
|
Adam Husar
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91f32b334e
Fixed generation of ComplexInstance with simple species containing dot
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4 年之前 |
|
Adam Husar
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5725fd0bf8
Cehcking that simple species must not contain '.' in their name, fixed
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4 年之前 |
|
Adam Husar
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3bd6bfca63
Descibed usages of the API::Species class, fixed semantic checks and
|
4 年之前 |
|
Adam Husar
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6040f6804e
Partial support for Python BNGL style reactions with orientations
|
4 年之前 |
