 Adam Husar
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0e405e8f00
Added check for case when release quantity in data model is not set
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3 年之前 |
|
Adam Husar
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2664a3bab9
Support for count region expression export to data model and from data
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3 年之前 |
|
Adam Husar
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97920e4001
Fixed parameter parsing ..-E.. was not handled correctly
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3 年之前 |
|
Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
|
Adam Husar
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2230866af0
Support for conversion of species superclasses with orientation or
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3 年之前 |
|
Adam Husar
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8be86237c4
Improved error message wehn rel sirte in data model does not have
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3 年之前 |
|
Adam Husar
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48e8a91060
Added support for division in MDLString counts,improved checks of counts
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3 年之前 |
|
Adam Husar
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ebff8f662b
Initial support for functions in data model parameters, these functions
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3 年之前 |
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Adam Husar
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5b056b55f4
Support for conversion of release sites into BNGL's seed species
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3 年之前 |
|
Adam Husar
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ce2f080f41
Observables now use directly patterns with compartments, 3 tests are
|
3 年之前 |
|
Adam Husar
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d8263b6a85
Initial step towards rework of observables with compartments, test that
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3 年之前 |
|
Adam Husar
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e7b9af4f01
Handling ':' in rxn name generation from data model
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3 年之前 |
|
Adam Husar
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b47457fcd8
Fixed compilation of data_model_to_pymcell
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3 年之前 |
|
Adam Husar
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aa26811328
Added check for duplicate names of generated objects, few related fixes
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3 年之前 |
|
Adam Husar
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df118ee0bb
Added export of geometry and instantiation to python
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3 年之前 |
|
Adam Husar
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fb7a6fa370
Moved file generator_constants.h to
|
3 年之前 |
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Adam Husar
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88054f97f7
Export to python - handlign naming and exporting objects only once
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3 年之前 |
|
Adam Husar
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73e06d7e06
Generation of observables into BNGL
|
4 年之前 |
|
Adam Husar
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e680f56def
Reorganized generation of observables from data model to prepare for
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4 年之前 |
|
Adam Husar
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1e98ed451a
Fixed conversions of params startin with '_' and also fixes in
|
4 年之前 |
|
Adam Husar
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d838be6b4d
Unified SurfaceProperty to use complex instead of species
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4 年之前 |
|
Adam Husar
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657f4e423d
Overriding release region in python generation if compartment for
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4 年之前 |
|
Adam Husar
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36dd7f702e
Fixed missing compartment for complexes and fixed semantic check
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4 年之前 |
|
Adam Husar
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eb5fc8339d
Finished support for compartments in rxns for python/bngl generation
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4 年之前 |
|
Adam Husar
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b027ea57da
Parsing of compartments in rxns in DM converter
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4 年之前 |
|
Adam Husar
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306a69419a
Rename API::ComplexInstance to API::Complex
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4 年之前 |
|
Adam Husar
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9d794f4c6c
Renamed BNG::CplxInstance to Cplx and removed all related uses of 'inst'
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4 年之前 |
|
Adam Husar
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5854c38aed
Handling ~ and ? in rxn names
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4 年之前 |
|
Adam Husar
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82d3abe017
Unified complex instance or species generation
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4 年之前 |
|
Adam Husar
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58a337a505
Improved parse_rxn_rule_side to handle BNGL syntax
|
4 年之前 |
