 Adam Husar
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f43346035e
Unified naming of 'rxn', all previous variants that used just 'rx' were
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3 年之前 |
|
Adam Husar
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38e5e7c3e9
Cleaned up compilation warnings with gcc 10 (except for bison warnings)
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3 年之前 |
|
Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
|
Adam Husar
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114d63f0fb
Fixed apply_vertex_moves to ignore defunct molecules
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3 年之前 |
|
Adam Husar
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44a7f04db5
An other set of refactors and TODO fixes
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3 年之前 |
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Adam Husar
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af9b27b795
Replaced all uses of float_t with double
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3 年之前 |
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Adam Husar
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fb61a3b188
Added Molecule flag MOLECULE_FLAG_NO_NEED_TO_SCHEDULE and using it in
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3 年之前 |
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Adam Husar
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3ea0052edb
Initial support for surf mol + surf class rxns, conversions to data
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3 年之前 |
|
Adam Husar
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32ad28e1e5
Disabled printing of flags into debug dump
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3 年之前 |
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Adam Husar
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3b7fcf8341
Prepared Partition::add_volume_molecule for compartment handling
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3 年之前 |
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Adam Husar
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7ac455c806
Removed Molecule::reactant_compartment_id
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3 年之前 |
|
Adam Husar
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74bb56582e
Removed previous compartments support, MDL tests pass but
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3 年之前 |
|
Adam Husar
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6552792e10
Fixed export of unnamed Count objects
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3 年之前 |
|
Adam Husar
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9330c60e14
Renumbered flags
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3 年之前 |
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Adam Husar
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2b113c8d6a
Cleanup of unused flags ACT_REACT, IN_SCHEDULE and MATURE_MOLECULE
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3 年之前 |
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Adam Husar
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455cf5a6a2
Renamed flag ACT_CLAMPED to MOLECULE_FLAG_ACT_CLAMPED
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3 年之前 |
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Adam Husar
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9f7d566eeb
Removed usage of flag IN_SURFACE in MCell4
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3 年之前 |
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Adam Husar
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682677d6ee
Removed usage of flag IN_VOLUME in MCell4
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3 年之前 |
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Adam Husar
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00635e89cb
Removed usage of flag ACT_DIFFUSE in MCell4
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3 年之前 |
|
Adam Husar
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1f1c9ca947
Renamed concentration clamp to clamp where applicable
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4 年之前 |
|
Adam Husar
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aa43d1fea3
First succesful clamp concentration simulation
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4 年之前 |
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Adam Husar
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3a8af8d35a
Intermediate commit wioth changes to concclamp, cannot be compiled
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4 年之前 |
|
Adam Husar
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eb3aa07b8b
Preparation for concentration clamp support
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4 年之前 |
|
Adam Husar
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52ee0ff4d3
Added support for vol rxns with compartments
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4 年之前 |
|
Adam Husar
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8f20aece5c
Initial support for compartments in rxns, all tests pass except:
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4 年之前 |
|
Adam Husar
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723a8d46ad
Added support for compartments for volume molecules
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4 年之前 |
|
Adam Husar
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fdfd7ef806
Added Molecule::birthday that will be needed for molecule "maturation"
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4 年之前 |
|
Adam Husar
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f54dd8b366
Cleaned up and fixed several FIXMEs
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4 年之前 |
|
Adam Husar
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0c844e712d
Removed Molecule::release_delay, used diffusion_time instead
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4 年之前 |
|
Adam Husar
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8f4f6d4312
Partial rework of molecule scheduling in DiffuseAndReactEvent as a
|
4 年之前 |
