 Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
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Adam Husar
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c6ed8097ca
Removed 'clone' methods that are not needed anymore due to generated
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3 年之前 |
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Adam Husar
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8aacc216e8
Added argument all_details to generated __str__ method to produce
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3 年之前 |
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Adam Husar
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c1443eadb7
Added support for copy.deepcopy of API objects
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3 年之前 |
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Adam Husar
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e53f1604fd
Added support for shallow copy of API objects
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3 年之前 |
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Adam Husar
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af9b27b795
Replaced all uses of float_t with double
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3 年之前 |
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Adam Husar
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e70edb861b
Fixed conversion of complexes from BNG to API and back for complexes
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3 年之前 |
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Adam Husar
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7c3085f28d
Set of changes towards build with MSVC
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3 年之前 |
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Adam Husar
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7f881c22e5
Fixed for build on Windows after merge with checkpoints branch
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3 年之前 |
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Adam Husar
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a0f7456d72
Added CountTerm.initial_reactions_count to be able to checkpoint number
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3 年之前 |
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Adam Husar
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9bf24dd2a1
Initial export of vectors into python
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3 年之前 |
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Adam Husar
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88054f97f7
Export to python - handlign naming and exporting objects only once
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3 年之前 |
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Adam Husar
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412095f9f3
Initial generation of checkpointing code
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3 年之前 |
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Adam Husar
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22172f9565
Renamed API ComponentInstance to Component, ElementaryMoleculeInstance
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4 年之前 |
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Adam Husar
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24a631af57
Finished printing of errors and warnings for cases when identical rxns
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4 年之前 |
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Adam Husar
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81609fc391
Generating method eq_nonarray_attributes used in method __eq__ of
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4 年之前 |
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Adam Husar
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ab723c1035
Fixed __eq__ operator for molecule and component types and instances
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4 年之前 |
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Adam Husar
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2d5679e6c6
Added __eq__ to all API classes and makde Complex use canonical form for
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4 年之前 |
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Adam Husar
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7fc9732ffa
Added missing space to generated API set_* methods
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4 年之前 |
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Adam Husar
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02f12f0f57
Rework of callbacks by introducing class callbacks, other API changes
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4 年之前 |
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Adam Husar
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eb5fc8339d
Finished support for compartments in rxns for python/bngl generation
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4 年之前 |
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Adam Husar
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306a69419a
Rename API::ComplexInstance to API::Complex
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4 年之前 |
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Adam Husar
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5a2c87b3c1
Introduced default orientation for complexes, compartment improvements
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4 年之前 |
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Adam Husar
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01dad6291a
Changed type of VizOutput.every_n_timesteps, Count.every_n_timesteps and
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4 年之前 |
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Adam Husar
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1054952833
Renamed ComplexInstance.bngl_string to name and updated gen.py to
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4 年之前 |
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Adam Husar
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429a3c97b4
Added ComplexInstance.as_species and fixed VizOutput.species_list
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4 年之前 |
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Adam Husar
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a2635bfff3
Changed ReleaseSite.species to .complex_instance, added check that a
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4 年之前 |
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Adam Husar
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a5cc755630
Added initial support for custom time/space step to pymcell4
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4 年之前 |
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Adam Husar
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346825a794
Added generation of method set_all_attributes_as_default_or_unset
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4 年之前 |
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Adam Husar
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7f9a3096bb
Interm. commit - almost done InstantiationData::load_bngl_seed_species
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4 年之前 |
