 Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
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Adam Husar
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ccee2366bd
Prepared counts for support of .gdat output format
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3 年之前 |
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Adam Husar
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c4efef42fd
Added option to Model.export_to_bngl to set simulation method
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3 年之前 |
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Adam Husar
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c9b75ec5b6
Added support for new visualization binary format v2
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3 年之前 |
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Adam Husar
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af9b27b795
Replaced all uses of float_t with double
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3 年之前 |
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Adam Husar
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e16672e5eb
Added SurfacePropertyType.REACTIVE, fixed export of surf class without
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3 年之前 |
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Adam Husar
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bdf6f466ae
Made count buffer size smaller and also opening the count output files
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3 年之前 |
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Adam Husar
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4ad2befb46
Export of RngState for checkpointing
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3 年之前 |
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Adam Husar
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df118ee0bb
Added export of geometry and instantiation to python
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3 年之前 |
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Adam Husar
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89940aae32
Added empty implementation of Model.save_checkpoint with a call to
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3 年之前 |
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Adam Husar
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dc3216114b
Extended molecule introspection to also provide information on surface
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4 年之前 |
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Adam Husar
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d5b2895f94
Changed rxn rate update - using ReactionRule setters instead of a method
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4 年之前 |
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Adam Husar
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867b7db545
Added support for reporting of possition the second surface reactant in
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4 年之前 |
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Adam Husar
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61340ac276
Support for flux clamp in MCell4 and in converters
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4 年之前 |
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Adam Husar
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4c5e82f2a3
Initial API support and generation for concentration clamps
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4 年之前 |
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Adam Husar
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18e490125c
Removed API class VolumeCompartment, moved related information to
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4 年之前 |
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Adam Husar
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5a2c87b3c1
Introduced default orientation for complexes, compartment improvements
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4 年之前 |
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Adam Husar
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afb615bc19
Renamed bond pattern constants, added BOND_ANY that is not supported yet
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4 年之前 |
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Adam Husar
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d1d4e772e8
Added conversion of components to mcell4 converter
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4 年之前 |
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Adam Husar
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92adae5da7
Extended API with SingleMoleculeReleaseInfo for release mode LIST
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4 年之前 |
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Adam Husar
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e0b79ed1d3
Intermediate commit of release pattern support in API and in python gen.
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4 年之前 |
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Adam Husar
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d9f8aff905
Initial support for introspection of molecules
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4 年之前 |
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Adam Husar
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7b2277940d
Renamed API enums to uppercase
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4 年之前 |
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Adam Husar
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427a90ea29
Fixed generation of reactions with orientations
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4 年之前 |
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Adam Husar
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97dd6be724
Missed files from previous commit
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4 年之前 |
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Adam Husar
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faad421e0a
Added SurfaceProperty to allow specifying mult. props for SurfaceClass
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4 年之前 |
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Adam Husar
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8fadf41e27
Added skeleton implementation of SurfaceClass to the pymcell4 API
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4 年之前 |
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Adam Husar
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7354b874e2
Added species superclasses as global objects to pymcell4
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4 年之前 |
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Adam Husar
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a58955b44e
Initial support for counting conversion in pymcell4, fixes in converter
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4 年之前 |
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Adam Husar
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46cee03171
GeometryObject and SurfaceRegion are now derived from Region
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4 年之前 |
