 Adam Husar
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53b63d1e30
Updated documentation for Count.get_current_value
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3 年之前 |
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Adam Husar
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de41fbda70
Preparation for default viz and count file prefix
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3 年之前 |
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Adam Husar
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ccee2366bd
Prepared counts for support of .gdat output format
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3 年之前 |
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Adam Husar
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4dc7ac4ec7
Count.count_expression simplification and refactor
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3 年之前 |
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Adam Husar
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a8e250d5ce
Support for examples in documentation, added links to example files to
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3 年之前 |
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Adam Husar
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f59d8e64f9
Improved documentation in model.yaml and observables.yaml
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3 年之前 |
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Adam Husar
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37210544dc
Removed argument subsystem from load_bngl_seed_species and
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3 年之前 |
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Adam Husar
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a0f7456d72
Added CountTerm.initial_reactions_count to be able to checkpoint number
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3 年之前 |
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Adam Husar
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df118ee0bb
Added export of geometry and instantiation to python
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3 年之前 |
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Adam Husar
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62cc5ed7fb
Removed VizOutput.all_species attribute
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4 年之前 |
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Adam Husar
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8c5af5da86
Handling case when viz output periodicity is 0
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4 年之前 |
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Adam Husar
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42271a90b9
Added Count.get_current_value and Observables.find_count
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4 年之前 |
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Adam Husar
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add0b08b31
Made load_bngl argument observables_files_prefix optional
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4 年之前 |
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Adam Husar
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306a69419a
Rename API::ComplexInstance to API::Complex
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4 年之前 |
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Adam Husar
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5189e7522d
Finished support for BNGL observables that use compartments
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4 年之前 |
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Adam Husar
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5a2c87b3c1
Introduced default orientation for complexes, compartment improvements
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4 年之前 |
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Adam Husar
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01dad6291a
Changed type of VizOutput.every_n_timesteps, Count.every_n_timesteps and
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4 年之前 |
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Adam Husar
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429a3c97b4
Added ComplexInstance.as_species and fixed VizOutput.species_list
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4 年之前 |
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Adam Husar
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1964c8c8e7
Removed CountTerm.species, using species_pattern instead, updated python
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4 年之前 |
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Adam Husar
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a681f40172
Added support for overriding BNG parameters from MCell4 model
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4 年之前 |
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Adam Husar
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283eb43991
Changed all occurences of 'filename' in API to 'file_name'
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4 年之前 |
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Adam Husar
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a0f90abeeb
Added method Observables::load_bngl_observables - not tested yet,
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4 年之前 |
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Adam Husar
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1ae05c7e15
Added species_pattern and molecules_pattern to CountTerm of MCell4 API
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4 年之前 |
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Adam Husar
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3d9235211b
Added support for multiplication of the whole count term
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4 年之前 |
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Adam Husar
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b3fcd12c0c
Added attribute all_species to VizOutput
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4 年之前 |
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Adam Husar
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301aabf6d6
Added commented out declaration of load bngl methods
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4 年之前 |
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Adam Husar
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5215df2857
Renamed generator into definition
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4 年之前 |
