 Adam Husar
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443c3e656c
Added support for cancellation of reaction in a callback
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3 年之前 |
|
Adam Husar
|
9662143b0d
Updated documentation of Model.apply_vertex_moves, added special section
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3 年之前 |
|
Adam Husar
|
9028ab065e
Updated documentation of Model.get_paired_molecules
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3 年之前 |
|
Adam Husar
|
d713648259
Added API method Model.get_paired_molecules
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3 年之前 |
|
Adam Husar
|
812f085949
Added support for for Model.pair_molecules, unpair_molecules, and
|
3 年之前 |
|
Adam Husar
|
4191554384
Added randomness to the order of objects to which dynamic geometry is
|
3 年之前 |
|
Adam Husar
|
03daf84885
Added default argument to Model.apply_vertex_moves to randomize order of
|
3 年之前 |
|
Adam Husar
|
de41fbda70
Preparation for default viz and count file prefix
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3 年之前 |
|
Adam Husar
|
a4a684b55c
Updated some example links and all links now point to master
|
3 年之前 |
|
Adam Husar
|
301ad47426
Added argument to Model.dump_internal_state and regenerated
|
3 年之前 |
|
Adam Husar
|
2148334198
Preparation for multi-compartment BNGL export
|
3 年之前 |
|
Adam Husar
|
7e06b8d87f
Updated documentation based on comments from Mohammad
|
3 年之前 |
|
Adam Husar
|
ccee2366bd
Prepared counts for support of .gdat output format
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3 年之前 |
|
Adam Husar
|
491e29447f
Added support for registering multiple wall hit callbacks
|
3 年之前 |
|
Adam Husar
|
c4efef42fd
Added option to Model.export_to_bngl to set simulation method
|
3 年之前 |
|
Adam Husar
|
0a2df5c950
Added Interospection.set_wall_color/get_wall_color and also export of
|
3 年之前 |
|
Adam Husar
|
578e00c902
Added API class Color
|
3 年之前 |
|
Adam Husar
|
f96e0067bc
Initial implementation of export_geometry to OBJ file format, name
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3 年之前 |
|
Adam Husar
|
a8e250d5ce
Support for examples in documentation, added links to example files to
|
3 年之前 |
|
Adam Husar
|
4a18687a54
Finalized documentation in sybsystem.yaml, the first pass of adding API
|
3 年之前 |
|
Adam Husar
|
f59d8e64f9
Improved documentation in model.yaml and observables.yaml
|
3 年之前 |
|
Adam Husar
|
29176f08f0
Added configuration Warnings.high_reaction_probability, started working
|
3 年之前 |
|
Adam Husar
|
029e6e314f
Added copyright information to be printed on model initialization.
|
3 年之前 |
|
Adam Husar
|
d415147165
Changed all input API Vec3 arguments to use List[float]
|
3 年之前 |
|
Adam Husar
|
f096510f8b
Fixed issue with iteration time floating point imprecision
|
3 年之前 |
|
Adam Husar
|
6772be3051
Added export of schedule checkpoints, using FINISHED as marker telling
|
3 年之前 |
|
Adam Husar
|
a233e9e8e0
Added submodule run_utils with methods get_last_checkpoint_dir and
|
3 年之前 |
|
Adam Husar
|
4c63d43057
Added handling of checkpointing signals
|
3 年之前 |
|
Adam Husar
|
f4beba1019
Added option Config.append_to_count_output_data to append to reac_data
|
3 年之前 |
|
Adam Husar
|
384b98b707
Support for asynchronous calls to Model.schedule_checkpoint e.g. from a
|
3 年之前 |
