 Adam Husar
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a4a684b55c
Updated some example links and all links now point to master
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3 年之前 |
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Adam Husar
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4504c4f2c8
Added support for release probability
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3 年之前 |
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Adam Husar
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9eddd70386
Fixed two paths to examples and the main base bath
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3 年之前 |
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Adam Husar
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f0a722d644
Renamed Instantiation.load_bngl_seed_species to
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3 年之前 |
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Adam Husar
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a8e250d5ce
Support for examples in documentation, added links to example files to
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3 年之前 |
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Adam Husar
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d3da90ca9f
Using intersection of volume releases when both region and compartment
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3 年之前 |
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Adam Husar
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f59d8e64f9
Improved documentation in model.yaml and observables.yaml
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3 年之前 |
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Adam Husar
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8dd648bc78
Improved documentation in instantiation.yaml, removed unused attribute
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3 年之前 |
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Adam Husar
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d8263b6a85
Initial step towards rework of observables with compartments, test that
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3 年之前 |
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Adam Husar
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d415147165
Changed all input API Vec3 arguments to use List[float]
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3 年之前 |
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Adam Husar
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37210544dc
Removed argument subsystem from load_bngl_seed_species and
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3 年之前 |
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Adam Husar
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a50be8ffed
Fixed release of surface molecules with ANY direction.
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3 年之前 |
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Adam Husar
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0b004dc169
Putting checkpointed molcules both vol and surf into the same array to
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3 年之前 |
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Adam Husar
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a32cb5aa2f
Added API classes ChkptVolMol and ChkptSurfMol and added preparation for
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3 年之前 |
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Adam Husar
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512eacd189
Renamed InstantiationData to Instantiation
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4 年之前 |
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Adam Husar
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16abc21b58
Unified InitialSurfaceRelease by using Complex instead of species
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4 年之前 |
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Adam Husar
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f82e4ebfc0
Unified MoleculeReleaseInfo and ReleaseSite by specifying orientation
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4 年之前 |
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Adam Husar
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18e490125c
Removed API class VolumeCompartment, moved related information to
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4 年之前 |
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Adam Husar
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306a69419a
Rename API::ComplexInstance to API::Complex
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4 年之前 |
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Adam Husar
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6e0a9d1d4e
Added API class VolumeCompartment and conversion from BNG
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4 年之前 |
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Adam Husar
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01dad6291a
Changed type of VizOutput.every_n_timesteps, Count.every_n_timesteps and
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4 年之前 |
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Adam Husar
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a2635bfff3
Changed ReleaseSite.species to .complex_instance, added check that a
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4 年之前 |
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Adam Husar
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e4fc34b327
Added members 'bngl_species' to releases API, and generating it in
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4 年之前 |
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Adam Husar
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df142a0bce
Added support for generation of components and elementary molecule types
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4 年之前 |
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Adam Husar
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4b8b574cbb
Initial processing of 2D releases from BNGL seed species, not tested yet
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4 年之前 |
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Adam Husar
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a681f40172
Added support for overriding BNG parameters from MCell4 model
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4 年之前 |
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Adam Husar
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283eb43991
Changed all occurences of 'filename' in API to 'file_name'
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4 年之前 |
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Adam Husar
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a0f90abeeb
Added method Observables::load_bngl_observables - not tested yet,
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4 年之前 |
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Adam Husar
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ee7b7712b9
Added support for concentration-based release to pymcell4
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4 年之前 |
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Adam Husar
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ba926922a2
Initial addition of InitialSurfaceRelease for the Python API
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4 年之前 |
