 Adam Husar
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ccee2366bd
Prepared counts for support of .gdat output format
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3 年之前 |
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Adam Husar
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c4efef42fd
Added option to Model.export_to_bngl to set simulation method
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3 年之前 |
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Adam Husar
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c9b75ec5b6
Added support for new visualization binary format v2
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3 年之前 |
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Adam Husar
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9ad3235cad
Fixed support for absorptive surface classes for surf mols
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3 年之前 |
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Adam Husar
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28544edbc7
Improved doc in subsystem.yaml, not finished yet
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3 年之前 |
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Adam Husar
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26a8a34870
Generating information about method arguments into Python help(),
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3 年之前 |
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Adam Husar
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c71ad493ed
API documentation improvements
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3 年之前 |
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Adam Husar
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e16672e5eb
Added SurfacePropertyType.REACTIVE, fixed export of surf class without
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3 年之前 |
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Adam Husar
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bdf6f466ae
Made count buffer size smaller and also opening the count output files
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3 年之前 |
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Adam Husar
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0b004dc169
Putting checkpointed molcules both vol and surf into the same array to
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3 年之前 |
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Adam Husar
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4ad2befb46
Export of RngState for checkpointing
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3 年之前 |
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Adam Husar
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89940aae32
Added empty implementation of Model.save_checkpoint with a call to
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3 年之前 |
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Adam Husar
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dc3216114b
Extended molecule introspection to also provide information on surface
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3 年之前 |
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Adam Husar
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d5b2895f94
Changed rxn rate update - using ReactionRule setters instead of a method
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4 年之前 |
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Adam Husar
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867b7db545
Added support for reporting of possition the second surface reactant in
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4 年之前 |
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Adam Husar
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7c74d4b586
Improved documentation generation and added generation of enums and
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4 年之前 |
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Adam Husar
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61340ac276
Support for flux clamp in MCell4 and in converters
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4 年之前 |
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Adam Husar
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4c5e82f2a3
Initial API support and generation for concentration clamps
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4 年之前 |
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Adam Husar
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18e490125c
Removed API class VolumeCompartment, moved related information to
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4 年之前 |
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Adam Husar
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5a2c87b3c1
Introduced default orientation for complexes, compartment improvements
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4 年之前 |
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Adam Husar
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afb615bc19
Renamed bond pattern constants, added BOND_ANY that is not supported yet
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4 年之前 |
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Adam Husar
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d1d4e772e8
Added conversion of components to mcell4 converter
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4 年之前 |
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Adam Husar
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92adae5da7
Extended API with SingleMoleculeReleaseInfo for release mode LIST
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4 年之前 |
|
Adam Husar
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5215df2857
Renamed generator into definition
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4 年之前 |
