 Adam Husar
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6a1734924c
Support for default VizOutput and Count directory
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3 年之前 |
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Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
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Adam Husar
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af9b27b795
Replaced all uses of float_t with double
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3 年之前 |
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Adam Husar
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23adc99547
Moved convert_cplx* and convert_elementary_molecule_type as static
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3 年之前 |
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Adam Husar
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6bfa479d0c
Parsing BNGL name directly in Complex ctor independently on subsystem
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3 年之前 |
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Adam Husar
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7c3085f28d
Set of changes towards build with MSVC
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3 年之前 |
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Adam Husar
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bd2928f2b4
Exporting molecules into simulation_state.py
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3 年之前 |
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Adam Husar
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eb328e72cf
Added BaseExportClass to define export interface and polished subsystem
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3 年之前 |
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Adam Husar
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8a318a7a6d
Skipping ALL_*MOLECULES species superclasses for python export, added
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3 年之前 |
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Adam Husar
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ed615e3642
Removed unnecessary enable_shared_from_this from Subsystem
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4 年之前 |
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Adam Husar
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512eacd189
Renamed InstantiationData to Instantiation
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4 年之前 |
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Adam Husar
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e126dd0187
Unified BNG naming with API by renaming MolType to ElemMolType,
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4 年之前 |
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Adam Husar
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22172f9565
Renamed API ComponentInstance to Component, ElementaryMoleculeInstance
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4 年之前 |
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Adam Husar
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dcae0e4fee
Intermediate commit towards comparison while adding rxn rules
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4 年之前 |
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Adam Husar
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a4953de580
Fixed error and warnign messages for
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4 年之前 |
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Adam Husar
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a4a923ba9d
Checking that simple species addition is either ignored if the same or
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4 年之前 |
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Adam Husar
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306a69419a
Rename API::ComplexInstance to API::Complex
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4 年之前 |
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Adam Husar
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9d794f4c6c
Renamed BNG::CplxInstance to Cplx and removed all related uses of 'inst'
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4 年之前 |
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Adam Husar
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97094b975e
Reorganization and fixes of reaction name handling
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4 年之前 |
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Adam Husar
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9892faaa52
Added support for releases of surface molecules read from BNGL seed
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4 年之前 |
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Adam Husar
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a681f40172
Added support for overriding BNG parameters from MCell4 model
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4 年之前 |
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Adam Husar
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283eb43991
Changed all occurences of 'filename' in API to 'file_name'
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4 年之前 |
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Adam Husar
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6f6f5199a3
Added API method Model.load_bngl
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4 年之前 |
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Adam Husar
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a0f90abeeb
Added method Observables::load_bngl_observables - not tested yet,
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4 年之前 |
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Adam Husar
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a2c4450153
Cleane most of the compilation warnings on MacOS
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4 年之前 |
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Adam Husar
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7f9a3096bb
Interm. commit - almost done InstantiationData::load_bngl_seed_species
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4 年之前 |
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Adam Husar
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c89e2309a8
Initial support for bngl parsing in API, conversion from API to MCell4
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4 年之前 |
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Adam Husar
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44f0f9ff74
Added implemetation to find_* methods of subsystem and inst data
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4 年之前 |
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Adam Husar
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8fadf41e27
Added skeleton implementation of SurfaceClass to the pymcell4 API
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4 年之前 |
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Adam Husar
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94acf2869a
Added conversion of species and viz outputs from Pymcell4 to Mcell4
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4 年之前 |
