 Adam Husar
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81c8626222
Fixed comparison for equality for Species, Complex, and Elem mol type
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3 年之前 |
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Adam Husar
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fcf1427724
Changed license from GPL to MIT, removed some empty/unused files
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3 年之前 |
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Adam Husar
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c6ed8097ca
Removed 'clone' methods that are not needed anymore due to generated
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3 年之前 |
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Adam Husar
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8aacc216e8
Added argument all_details to generated __str__ method to produce
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3 年之前 |
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Adam Husar
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d8263b6a85
Initial step towards rework of observables with compartments, test that
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3 年之前 |
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Adam Husar
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c008bdacc1
Simplified Complex::to_bngl_str_w_custom_orientation
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3 年之前 |
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Adam Husar
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8ee2221e52
Removed commented-out code.
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3 年之前 |
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Adam Husar
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e70edb861b
Fixed conversion of complexes from BNG to API and back for complexes
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3 年之前 |
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Adam Husar
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ea372e41a5
Fixed assertion in BNG parser after a semantic error, removed
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3 年之前 |
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Adam Husar
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032fdadd02
Initial support for compartments for elementary molecules in API
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3 年之前 |
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Adam Husar
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6ff7a88f82
Moved BNG-conversion related methods to new class BNGConverter,
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3 年之前 |
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Adam Husar
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23adc99547
Moved convert_cplx* and convert_elementary_molecule_type as static
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3 年之前 |
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Adam Husar
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6bfa479d0c
Parsing BNGL name directly in Complex ctor independently on subsystem
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3 年之前 |
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Adam Husar
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e0f5daee41
Not exporting orientation nor compartment into BNGL complex name for
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3 年之前 |
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Adam Husar
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91689625b6
Fixed species and reaction classes export when checkpointing a model
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3 年之前 |
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Adam Husar
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e126dd0187
Unified BNG naming with API by renaming MolType to ElemMolType,
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4 年之前 |
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Adam Husar
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22172f9565
Renamed API ComponentInstance to Component, ElementaryMoleculeInstance
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4 年之前 |
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Adam Husar
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24a631af57
Finished printing of errors and warnings for cases when identical rxns
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4 年之前 |
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Adam Husar
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eef8761d25
Creating canonical Complex And ReactionRule name with special
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4 年之前 |
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Adam Husar
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43031c89ab
Added implementation of ReactionRule::__eq__ that compares canonical
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4 年之前 |
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Adam Husar
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28689ff568
Including compartment name in Complex.to_bngl_str, added check
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4 年之前 |
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Adam Husar
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81609fc391
Generating method eq_nonarray_attributes used in method __eq__ of
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4 年之前 |
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Adam Husar
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1be8580b7c
Fixed Complex.__eq__ to handle components in different order
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4 年之前 |
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Adam Husar
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2d5679e6c6
Added __eq__ to all API classes and makde Complex use canonical form for
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4 年之前 |
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Adam Husar
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79bb63a4c2
Added ReactionRule.to_bngl_str()
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4 年之前 |
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Adam Husar
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306a69419a
Rename API::ComplexInstance to API::Complex
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4 年之前 |
