hungerzs
/
liftr


			
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<a href="#liftr" class="anchor"></a>liftr <a href="https://liftr.me"><img src="https://i.imgur.com/3SCYZu0.png" align="right" alt="logo" height="180" width="180"></a>
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<p>liftr aims to solve the problem of <em>persistent reproducible reporting</em>. To achieve this goal, it extends the <a href="http://rmarkdown.rstudio.com">R Markdown</a> metadata format, and uses Docker to containerize and render R Markdown documents.</p>
<div id="installation" class="section level2">
<h2 class="hasAnchor">
<a href="#installation" class="anchor"></a>Installation</h2>
<p>Install liftr from CRAN:</p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">install.packages</span>(<span class="st">"liftr"</span>)</code></pre></div>
<p>Or try the development version on GitHub:</p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="co"># install.packages("devtools")</span>
devtools<span class="op">::</span><span class="kw"><a href="http://www.rdocumentation.org/packages/devtools/topics/install_github">install_github</a></span>(<span class="st">"road2stat/liftr"</span>)</code></pre></div>
<p><a href="https://liftr.me/articles/">Browse the vignettes</a> or the <a href="https://vimeo.com/212815497">demo video</a> for a quick-start.</p>
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<div id="workflow" class="section level2">
<h2 class="hasAnchor">
<a href="#workflow" class="anchor"></a>Workflow</h2>
<p><img src="https://i.imgur.com/AKveypK.png" width="100%" alt="Containerize R Markdown Documents with liftr"></p>
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<th align="left">Time</th>
<th align="left">Event</th>
<th align="left">Location</th>
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<tr class="odd">
<td align="left">July 27, 2017</td>
<td align="left">
<a href="https://bioconductor.org/help/course-materials/2017/BioC2017/">BioC 2017</a> (<a href="https://nanx.me/posters/dockflow-poster-bioc2017.pdf">poster</a> for <a href="https://dockflow.org/">dockflow.org</a>)</td>
<td align="left">Dana-Farber Cancer Institute, Boston, MA</td>
</tr>
<tr class="even">
<td align="left">May 20, 2017</td>
<td align="left">
<a href="http://china-r.org/">The 10th China-R Conference</a> (talk)</td>
<td align="left">Tsinghua University, Beijng, China</td>
</tr>
<tr class="odd">
<td align="left">April 18, 2017</td>
<td align="left">
<a href="http://2017.dockercon.com/">DockerCon 2017</a> (<a href="https://nanx.me/talks/dockercon2017-liftr-nanxiao.pdf">talk</a>)</td>
<td align="left">Austin Convention Center, Austin, TX</td>
</tr>
<tr class="even">
<td align="left">December 3, 2015</td>
<td align="left">
<a href="http://learn.cri.uchicago.edu/2015-cri-bioinformatics-workshop/">CRI Bioinformatics Workshop</a> (talk)</td>
<td align="left">The University of Chicago, Chicago, IL</td>
</tr>
<tr class="odd">
<td align="left">July 21, 2015</td>
<td align="left">
<a href="https://bioconductor.org/help/course-materials/2015/BioC2015/">BioC 2015</a> (workshop)</td>
<td align="left">Fred Hutchinson Cancer Research Center, Seattle, WA</td>
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<div id="contribute" class="section level2">
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<a href="#contribute" class="anchor"></a>Contribute</h2>
<p>To contribute to this project, please take a look at the <a href="https://github.com/road2stat/liftr/blob/master/CONTRIBUTING.md">Contributing Guidelines</a> first. Please note that this project is released with a <a href="https://github.com/road2stat/liftr/blob/master/CONDUCT.md">Contributor Code of Conduct</a>. By participating in this project you agree to abide by its terms.</p>
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<a href="#license" class="anchor"></a>License</h2>
<p>liftr is free and open source software, licensed under GPL-3.</p>
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<li>Download from CRAN at <br><a href="https://cran.r-project.org/package=liftr">https://cran.r-project.org/package=liftr</a>
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<li>Browse source code at <br><a href="https://github.com/road2stat/liftr">https://github.com/road2stat/liftr</a>
</li>
<li>Report a bug at <br><a href="https://github.com/road2stat/liftr/issues">https://github.com/road2stat/liftr/issues</a>
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</ul>
<h2>License</h2>
<p><a href="https://www.r-project.org/Licenses/GPL-3">GPL-3</a> | file <a href="LICENSE.html">LICENSE</a></p>
<h2>Developers</h2>
<ul class="list-unstyled">
<li>Nan Xiao <br><small class="roles"> Author, maintainer </small> <br><small>(0000-0002-0250-5673)</small>
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<li><a href="authors.html">All authors...</a></li>
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<h2>Dev status</h2>
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<li><a href="https://travis-ci.org/road2stat/liftr"><img src="https://travis-ci.org/road2stat/liftr.svg?branch=master" alt="Build Status"></a></li>
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