 Evgeny Tankhilevich
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c1d86b1953
sanitise the input file - remove malicious >
|
5 年之前 |
|
Evgeny Tankhilevich
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eb88d8ab74
handle SCOPe/astral IDs
|
5 年之前 |
|
Evgeny Tankhilevich
|
2b0283251f
Revert the change in 01604ed that breaks the a3m inputs
|
5 年之前 |
 Milot Mirdita
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01604edf5d
Fix #110 addss.pl breaking a3ms with ">" in the header name.
|
5 年之前 |
 meiermark
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7366a2be43
debian stuff
|
7 年之前 |
|
meiermark
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26fa5f08ff
addss.pl may now find and process cif files with dssp;
|
8 年之前 |
|
meiermark
|
80dbba54c4
bugfix missing psipred predictions
|
8 年之前 |
 mmeier
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68f7df0733
adjusted the header of the scripts
|
9 年之前 |
|
mmeier
|
e23b612742
changed -opt:
|
10 年之前 |
|
mmeier
|
b0b93b38ed
addss.pl - works now with stdout and stdin
|
10 年之前 |
|
Milot Mirdita
|
7602b7b830
Fixed addss.pl for compressed PDB databases
|
10 年之前 |
 meiermark
|
9081e7cc41
addss: late writing
|
10 年之前 |
 soeding
|
ab0bc9f549
Updated version to 2.0.16, February 2013, updated CHANGES, CHANGES_planned, hhsuite-userguide.tex
|
11 年之前 |
|
soeding
|
0c38c89f2f
minimal changes
|
12 年之前 |
|
soeding
|
413a93f47f
hhhmm.C: Added pseudocounts to option -scwin. Perhaps this option performs better now? => test! Added files mergeali.pl, pdb2fasta.pl, pdbfilter.pl. Improved help of mergeali.pl
|
12 年之前 |
|
soeding
|
ea46a5bfdb
Corrections and updates to hhblitsdb.pl -a|-r
|
12 年之前 |
|
soeding
|
800f809be4
fixed small bug that removed all sequences from output alignment when trying to use append in hhsearch/hhalign
|
12 年之前 |
 Andy Hauser
|
4235b31748
Bump version to 2.0.15
|
12 年之前 |
|
Andy Hauser
|
426532ed84
Correct release to HHsuite version 2.0.14 (May 2012)
|
12 年之前 |
|
soeding
|
5742d8d7ce
Removed the patch in addss.pl that appended XXX's to the MSA if fewer than 26 match states were present. This is no longer necessary as PSI-BLAST can now deal with these short sequences/MSAs
|
12 年之前 |
|
soeding
|
e77bdeb9a0
Removed a bug in addss.pl that occurred when an MSA contained a header '#<some_annotation>\n
|
12 年之前 |
|
soeding
|
1a74ad2d94
Bug with -d option in hhmakemodel.pl fixed. Perl scripts to add to package in the future already added as comment to user guide.
|
12 年之前 |
|
soeding
|
a6483b7f0e
major reworking of help lists in hhblits and hhsearch, minor corrections in README; better error messages in perl scripts through changes in HHPaths:System function
|
12 年之前 |
|
soeding
|
f30a2b864d
Update of user guide to reflect changed terminology HHblits databases => HH-suite databases etc.
|
12 年之前 |
|
soeding
|
602d306d64
* Inserted System() function into HHPaths.pm and changed calls to local System() function in perl scripts to call to function in HHPaths.pm
|
12 年之前 |
|
soeding
|
1143500516
* All error messages are now written to stderr (not stdout) and are of the form
|
12 年之前 |
|
soeding
|
956c695ba5
* Fixed a bug that could result in segfaults during realignment stage in rare cases when one of first three hits had more than one suboptimal alignment.
|
12 年之前 |
|
Andy Hauser
|
2516aa7526
Fix paths.
|
13 年之前 |
|
soeding
|
5c3a13a103
added path to hhconsensus call (thanks to Joern for identifying this bug
|
13 年之前 |
|
soeding
|
af74f96115
version number 2.0.3, added cases for psipred3 in addss.pl
|
13 年之前 |
