% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/runMrt.R
\name{runMrt}
\alias{runMrt}
\title{Run MODIS Reprojection Tool with Specified Parameters}
\source{
You can obtain MRT-grid after registration from: 
\url{https://lpdaac.usgs.gov/tools/modis_reprojection_tool}.
}
\usage{
runMrt(...)
}
\arguments{
\item{...}{See Details.}
}
\description{
Specifying input parameters, this function gets MODIS grid data from the 
archive (HTTP/FTP or local) and processes them with the 'MRT-grid' tool. See 
also the 'MRT' manual, available online via 
\url{https://lpdaac.usgs.gov/sites/default/files/public/mrt41_usermanual_032811.pdf}, 
for further information.
}
\details{
\describe{
\tabular{rll}{
\tab \code{product}\tab See \code{\link{getProduct}}.\cr
\tab \code{begin}\tab See \code{\link{transDate}}.\cr
\tab \code{end}\tab See \code{\link{transDate}}.\cr
\tab \code{extent}\tab See \code{\link{getTile}}.\cr
\tab \code{SDSstring}\tab See \code{\link{getSds}}. Default is to extract all 
SDS.\cr
\tab \code{job}\tab \code{character}. Name of the current job for the 
creation of the output folder. If not specified, it is created in 
'PRODUCT.COLLECTION_DATETIME'\cr

\tab \code{localArcPath}\tab \code{character}. Defaults to 
\code{options("MODIS_localArcPath")}. Local path to look for and/or download 
MODIS files.\cr
\tab \code{outDirPath}\tab \code{character}. Defaults to 
\code{options("MODIS_outDirPath")}. Root directory where to write \code{job} 
folder.\cr

\tab \code{dataType}\tab \code{character}, defaults to \code{'GeoTiff'} (see 
\code{\link{MODISoptions}}. 'MRT' supports: \code{"raw binary"} (hdr+dat), 
\code{"HDF-EOS"} (hdf), and \code{"GeoTiff"} (tif). Any other format 
specified through \code{\link{MODISoptions}} or \code{dataType}, is switched 
to 'GeoTiff'.\cr

\tab \code{outProj}\tab \code{character}, see 'MRT' manual.\cr
\tab \code{zone}\tab Optional UTM zone number when \code{outProj = "UTM"}. If 
not set, it is autodetected. See 'MRT' manual.\cr
\tab \code{projPara}\tab \code{character} in the form "6371007.18 0.00 0.00 
...". For \code{outProj \%in\% c("GEO","SIN")}, it is autodetected. See 'MRT' 
manual.\cr
\tab \code{datum}\tab \code{character}, defaults to 'NODATUM'. See 'MRT' 
manual.\cr

\tab \code{mosaic}\tab \code{logical}, defaults to \code{TRUE}. Mosaic files 
or not? One case for setting \code{mosaic=FALSE} is a too large \code{extent}. 
HDF4 file supports max 2GB filesize, if crossed mosaicing process will fail.\cr
\tab \code{anonym}\tab \code{logical}, defaults to \code{TRUE}. If 
\code{FALSE}, the job name is added at the end of the root filename.\cr
\tab \code{quiet}\tab \code{logical}, defaults to \code{FALSE}. It is up to 
you to switch to 'boring' alias \code{FALSE}. Not fully implemented!\cr
\tab \code{dlmethod}\tab default \code{options("MODIS_dlmethod")}. Argument 
passed to \code{\link{download.file}} (see \code{\link{MODISoptions}}).\cr
\tab \code{stubbornness}\tab Default is \code{options("MODIS_stubborness")}. See \code{?MODISoptions}\cr
}
}
}
\examples{
\dontrun{
runMrt( product="MOD11A1", extent="austria", begin="2010001", end="2010002", SDSstring="101",
        job="ExampleGEOdelme", outProj="GEO")
runMrt( product="MOD11A1", extent="austria", begin="2010001", end="2010002", SDSstring="101",
        job="ExampleSINdelme", outProj="SIN")
runMrt( product="MOD11A1", extent="austria", begin="2010001", end="2010002", SDSstring="101",
        job="ExampleUTMdelme", outProj="UTM")
}
}
\seealso{
\code{\link{getHdf}}.
}
\author{
Matteo Mattiuzzi and Forrest Stevens
}